CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80491
CDX88165

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79960.1	CDX80491	AT5G25220.1	15781858
AT1G79960.1	CDX88165	AT5G25220.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37564	Canola	plastid	88.59	89.49
CDX87287	Canola	nucleus, plastid	58.39	60.84
CDY58777	Canola	nucleus, plastid	58.05	60.7
AT1G79960.1	Thale cress	nucleus, plastid	44.63	45.24
KRH09849	Soybean	mitochondrion, nucleus	26.17	31.33
Solyc03g120190.2.1	Tomato	plastid	28.52	30.91
PGSC0003DMT400014515	Potato	nucleus	28.86	29.86
VIT_09s0002g04630.t01	Wine grape	mitochondrion, nucleus	27.18	29.14
EES00995	Sorghum	nucleus	20.13	25.53
EER92063	Sorghum	nucleus	20.13	25.42
GSMUA_Achr8P04020_001	Banana	mitochondrion	22.15	25.19
TraesCS6D01G041100.1	Wheat	nucleus, plastid	20.13	25.1
KRH47051	Soybean	nucleus	23.49	24.82
Zm00001d044357_P001	Maize	cytosol	19.8	24.79
TraesCS6A01G035700.1	Wheat	nucleus	20.13	24.69
HORVU6Hr1G006440.1	Barley	cytosol	20.13	24.29
CDY42794	Canola	plastid	14.77	23.53
KRH44372	Soybean	nucleus	14.43	22.87
CDY29776	Canola	plastid	14.43	22.87
Zm00001d020198_P001	Maize	nucleus	19.46	22.66
TraesCS6B01G050100.1	Wheat	nucleus	17.79	22.18
CDY64911	Canola	cytosol	16.44	20.68
CDY12233	Canola	mitochondrion	15.77	19.92
CDY06168	Canola	cytosol, mitochondrion	15.44	19.91
TraesCS5A01G195700.1	Wheat	nucleus, plastid	18.12	19.85
EER96623	Sorghum	nucleus	17.79	19.7
TraesCS5B01G187700.1	Wheat	nucleus	17.79	19.56
TraesCS5D01G195300.1	Wheat	nucleus	17.79	19.49
CDY10024	Canola	nucleus	14.77	19.38
HORVU5Hr1G056810.1	Barley	nucleus	17.45	19.33
CDY10106	Canola	cytosol	13.76	18.98
CDY47289	Canola	cytosol	13.76	17.37

Protein Annotations

EnsemblPlants:CDY41111	EnsemblPlantsGene:GSBRNA2T00072452001	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045892	InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C	PANTHER:PTHR33057
PANTHER:PTHR33057:SF29	PFAM:PF04844	PFscan:PS51754	ProteinID:CDY41111	ProteinID:CDY41111.1	SEG:seg
TIGRFAMs:TIGR01568	UniParc:UPI0004EDD68E	UniProt:A0A078HTV2	MapMan:15.5.37	:	:

Description

BnaC05g11020DBnaC05g11020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HTV2]

Coordinates

chrLK032490:-:162184..163080

Molecular Weight (calculated)

34563.6 Da

IEP (calculated)

8.217

GRAVY (calculated)

-1.060

Length

298 amino acids

Sequence
(BLAST)

001: MPNPVQQSVH GYLSKIKREA GKLQLSSSKS LSSSKKWVLS YKLHKKLSSL MNVRRPSKAC RVNDDDHHQD PGQAATLSDI DRFLEENFKS LCIRDGGEEG
101: EEDHHRRMTK KKEKRDQSSD DSSDTDEDDY YRHRFERTWG QAVYDSPKLP DPRRRTERLS PPPGSSEGTP SMYTTPEEEE ERRSLRSNSS SLVLPENCIA
201: VLRCTEEPQE DFRRSMVEMM ESKLGGGEVD WDLMEELLFC YLDLNHKKSH KFILSAFVDL IISLRDKEKR VTRKSLEMSL TTRAARERLS KRSYASRN

Best Arabidopsis Sequence Match ( AT1G79960.1 )
(BLAST)

001: MPNPLQKSLH GYLSKIKKET GKLQLSSSHS FSSSKNWVLG KHPKKLSFSF KHRRRSSKTR FSKEEPVYHQ DSAHAATLSD IDRFLEENFK SLCIRDDQED
101: DQHQARVTKN KEKRESSSDD SDDDDDDDDY RHRFERTWGH AVYDSPKQPP DLLRTERLSP PPGSSEGRPS METTSTSSER QSRSTLVLPE NCIAVLRYTD
201: EPQEDFRQSM VEMMESKLGM RESEVDWDLM EELLFCYLDL NDKKSHKFIL SAFVDLIIAL REKEKRITRK GHVRSLSTRA ARDRLRKRMI MSDN

Arabidopsis Description

OFP14OFP14 [Source:UniProtKB/TrEMBL;Acc:A0A178W942]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.