CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032464.1-P	Field mustard	nucleus, plastid	96.97	98.68
CDY10024	Canola	nucleus	92.64	94.27
CDY10106	Canola	cytosol	63.64	68.06
AT1G05420.2	Thale cress	mitochondrion, plastid	68.83	65.7
CDY47289	Canola	cytosol	64.94	63.56
CDY12233	Canola	mitochondrion	50.22	49.15
CDY64911	Canola	cytosol	49.35	48.1
VIT_05s0020g03520.t01	Wine grape	plastid	41.13	42.6
Solyc09g082080.1.1	Tomato	cytosol, mitochondrion	34.63	37.91
KRH35514	Soybean	plastid	28.14	36.11
PGSC0003DMT400082125	Potato	cytosol, mitochondrion	33.77	35.45
KRG91320	Soybean	plastid	28.57	34.74
Zm00001d027739_P001	Maize	nucleus, plastid	26.84	33.88
CDY42794	Canola	plastid	27.27	33.69
CDY29776	Canola	plastid	27.27	33.51
GSMUA_Achr3P30930_001	Banana	mitochondrion	30.3	33.33
GSMUA_Achr4P07580_001	Banana	plastid	29.0	31.6
HORVU4Hr1G073070.1	Barley	mitochondrion	26.41	29.61
TraesCS4B01G275200.1	Wheat	mitochondrion	25.97	29.41
TraesCS4D01G273800.1	Wheat	mitochondrion	25.11	28.16
EER92828	Sorghum	mitochondrion	25.54	28.1
TraesCS4A01G030800.1	Wheat	mitochondrion	24.68	27.8
Os03t0159400-01	Rice	mitochondrion	25.54	27.57
CDY37564	Canola	plastid	19.91	15.59
CDY41111	Canola	plastid	19.91	15.44
CDX87287	Canola	nucleus, plastid	17.75	14.34
CDY58777	Canola	nucleus, plastid	17.32	14.04

Protein Annotations

EnsemblPlants:CDY06168	EnsemblPlantsGene:GSBRNA2T00122064001	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045892	InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C	PANTHER:PTHR33057
PANTHER:PTHR33057:SF21	PFAM:PF04844	PFscan:PS51754	ProteinID:CDY06168	ProteinID:CDY06168.1	SEG:seg
TIGRFAMs:TIGR01568	UniParc:UPI0004EDC8B4	MapMan:15.5.37	:	:	:

Description

BnaA09g50350D

Coordinates

chrLK031968:-:108655..109350

Molecular Weight (calculated)

25645.6 Da

IEP (calculated)

4.879

GRAVY (calculated)

-0.463

Length

231 amino acids

Sequence
(BLAST)

001: MPRIMWKGFH HCFPSNLNNP SSSPSDAAVS DDDPNRPSIL LINNFNLLYS DSSPTDRPIS KRLIDAEPSS TTTFTASTST AAYSSSASFD ESDDYDFTPE
101: HSPPPDLTSV LASRRFFVSS PGRSNLITDS PDLRPRFNYE TATATTTTRL LTGGTAVKQY VQSPDPYNDF RRSMQEMLDA VTDAGDVRRY EFLHELLLSY
201: LSLNAADTHK FIIRAFADIL VSLLSDGHRT S

Best Arabidopsis Sequence Match ( AT1G05420.2 )
(BLAST)

001: MLNTYSLTLF LTKTKTMPRV MWKNFHLCFP SNLTKPSSSP SGATSDDPNR PSILLINNFN LLYDDSSAAH RRLSKPLIHD VEPSSTFTAS TSTAANSSSS
101: SASYDDSDNY GFAPDDDSPP PDLTAVLASR RFFFSSPGCS NSITDSPDLR CRDNYDTATR LLTGGTAVKH YVQSPDPYND FRRSMQEMID AVTNAGDLRR
201: YEFLHELLLS YLSLNAADTH KFIIRAFADI LVSLLSDGHR IS

Arabidopsis Description

ATOFP12ovate family protein 12 [Source:TAIR;Acc:AT1G05420]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.