CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91320	Soybean	plastid	72.22	68.42
VIT_05s0020g03520.t01	Wine grape	plastid	41.67	33.63
KRH71408	Soybean	cytosol	37.78	33.33
KRH32029	Soybean	cytosol	39.44	32.42
PGSC0003DMT400082125	Potato	cytosol, mitochondrion	39.44	32.27
Solyc09g082080.1.1	Tomato	cytosol, mitochondrion	37.78	32.23
Zm00001d027739_P001	Maize	nucleus, plastid	32.22	31.69
CDY10106	Canola	cytosol	36.11	30.09
TraesCS4A01G030800.1	Wheat	mitochondrion	33.33	29.27
HORVU4Hr1G073070.1	Barley	mitochondrion	33.33	29.13
TraesCS4D01G273800.1	Wheat	mitochondrion	33.33	29.13
AT1G05420.2	Thale cress	mitochondrion, plastid	38.89	28.93
TraesCS4B01G275200.1	Wheat	mitochondrion	32.78	28.92
EER92828	Sorghum	mitochondrion	33.33	28.57
CDY06168	Canola	cytosol, mitochondrion	36.11	28.14
AT4G14860.1	Thale cress	plastid	28.33	28.02
CDY64911	Canola	cytosol	36.67	27.85
CDY42794	Canola	plastid	28.89	27.81
Bra032464.1-P	Field mustard	nucleus, plastid	35.0	27.75
CDY10024	Canola	nucleus	35.0	27.75
GSMUA_Achr3P30930_001	Banana	mitochondrion	32.22	27.62
Os03t0159400-01	Rice	mitochondrion	32.78	27.57
CDY12233	Canola	mitochondrion	36.11	27.54
CDY47289	Canola	cytosol	36.11	27.54
Bra005611.1-P	Field mustard	cytosol	36.11	27.43
GSMUA_Achr4P07580_001	Banana	plastid	32.22	27.36
KRH67233	Soybean	nucleus, plastid	37.78	27.2
CDY29776	Canola	plastid	28.33	27.13
KRG95550	Soybean	mitochondrion, plastid	38.33	26.34
AT2G32100.1	Thale cress	nucleus	33.89	25.0
Bra036908.1-P	Field mustard	plastid	27.78	23.36
KRH09849	Soybean	mitochondrion, nucleus	26.11	18.88
KRH44372	Soybean	nucleus	16.11	15.43
KRH47051	Soybean	nucleus	23.33	14.89

Protein Annotations

EntrezGene:102667886	MapMan:15.5.37	EMBL:ACUP02006684	EnsemblPlantsGene:GLYMA_10G247600	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892	InterPro:IPR006458	UniProt:K7LL92
EnsemblPlants:KRH35514	ProteinID:KRH35514	ProteinID:KRH35514.1	InterPro:Ovate	InterPro:Ovate_C	PFAM:PF04844
PFscan:PS51754	PANTHER:PTHR33057	PANTHER:PTHR33057:SF65	TIGRFAMs:TIGR01568	UniParc:UPI000296D8B1	SEG:seg

Description

hypothetical protein

Coordinates

chr10:+:47602679..47604001

Molecular Weight (calculated)

20295.1 Da

IEP (calculated)

8.652

GRAVY (calculated)

-0.356

Length

180 amino acids

Sequence
(BLAST)

001: MPSLFSKHLH LCFFKPKYPT ILCQHSHHTP PPSSADNSDA TSSTSTEPDF ASIFASQRFF FSSPGTSNSI VESPDTRTFV VPTGGGVGVP KYSLNPYVDF
101: LRSMQEMIRS RQVLDITKDS EYLHELLLCY LALNPTHTHK HILRAFTDLV LELLSSTTPC RTTHNHNSHR RHRSLSGRLL

Best Arabidopsis Sequence Match ( AT1G05420.2 )
(BLAST)

001: MLNTYSLTLF LTKTKTMPRV MWKNFHLCFP SNLTKPSSSP SGATSDDPNR PSILLINNFN LLYDDSSAAH RRLSKPLIHD VEPSSTFTAS TSTAANSSSS
101: SASYDDSDNY GFAPDDDSPP PDLTAVLASR RFFFSSPGCS NSITDSPDLR CRDNYDTATR LLTGGTAVKH YVQSPDPYND FRRSMQEMID AVTNAGDLRR
201: YEFLHELLLS YLSLNAADTH KFIIRAFADI LVSLLSDGHR IS

Arabidopsis Description

ATOFP12ovate family protein 12 [Source:TAIR;Acc:AT1G05420]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.