CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47289	Canola	cytosol	95.83	87.71
CDY06168	Canola	cytosol, mitochondrion	68.06	63.64
CDY10024	Canola	nucleus	64.81	61.67
AT1G05420.2	Thale cress	mitochondrion, plastid	65.74	58.68
CDY12233	Canola	mitochondrion	47.69	43.64
CDY64911	Canola	cytosol	47.69	43.46
VIT_05s0020g03520.t01	Wine grape	plastid	38.89	37.67
Solyc09g082080.1.1	Tomato	cytosol, mitochondrion	35.65	36.49
KRH35514	Soybean	plastid	30.09	36.11
KRG91320	Soybean	plastid	31.48	35.79
PGSC0003DMT400082125	Potato	cytosol, mitochondrion	34.72	34.09
CDY42794	Canola	plastid	28.7	33.16
CDY29776	Canola	plastid	28.24	32.45
GSMUA_Achr3P30930_001	Banana	mitochondrion	31.02	31.9
GSMUA_Achr4P07580_001	Banana	plastid	30.56	31.13
Zm00001d027739_P001	Maize	nucleus, plastid	25.93	30.6
TraesCS4B01G275200.1	Wheat	mitochondrion	27.78	29.41
TraesCS4A01G030800.1	Wheat	mitochondrion	27.78	29.27
TraesCS4D01G273800.1	Wheat	mitochondrion	27.78	29.13
HORVU4Hr1G073070.1	Barley	mitochondrion	27.31	28.64
EER92828	Sorghum	mitochondrion	27.78	28.57
Os03t0159400-01	Rice	mitochondrion	27.78	28.04
CDY58777	Canola	nucleus, plastid	20.83	15.79
CDX87287	Canola	nucleus, plastid	20.83	15.73
CDY37564	Canola	plastid	19.44	14.24
CDY41111	Canola	plastid	18.98	13.76

Protein Annotations

EnsemblPlants:CDY10106	EnsemblPlantsGene:GSBRNA2T00031909001	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045892	InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C	PANTHER:PTHR33057
PANTHER:PTHR33057:SF21	PFAM:PF04844	PFscan:PS51754	ProteinID:CDY10106	ProteinID:CDY10106.1	SEG:seg
TIGRFAMs:TIGR01568	UniParc:UPI0004EDB971	UniProt:A0A078F9S4	MapMan:15.5.37	:	:

Description

BnaC05g03490DBnaC05g03490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F9S4]

Coordinates

chrLK032001:-:56994..57704

Molecular Weight (calculated)

23897.0 Da

IEP (calculated)

6.351

GRAVY (calculated)

-0.312

Length

216 amino acids

Sequence
(BLAST)

001: MPRTMWKDFH LCFPTNFIKP SSDAAASSQE PNRPSILLIN NFNQLYDDST ATGHRISKPI IEVIPPSSIT TATTFTASTS TSTTDSPTLD LTAVLASRRF
101: FFSSPGRSNS ITDSPDLRPR FEYKTSTTTT AATTLLTGGA AVKQCVQSPD PYNDFRRSMQ EMLDAVTDAG DARRYEFLHE LLLSYLSLNA EDTHKFIIRA
201: FADVLVSLLS DGHRTN

Best Arabidopsis Sequence Match ( AT1G05420.2 )
(BLAST)

001: MLNTYSLTLF LTKTKTMPRV MWKNFHLCFP SNLTKPSSSP SGATSDDPNR PSILLINNFN LLYDDSSAAH RRLSKPLIHD VEPSSTFTAS TSTAANSSSS
101: SASYDDSDNY GFAPDDDSPP PDLTAVLASR RFFFSSPGCS NSITDSPDLR CRDNYDTATR LLTGGTAVKH YVQSPDPYND FRRSMQEMID AVTNAGDLRR
201: YEFLHELLLS YLSLNAADTH KFIIRAFADI LVSLLSDGHR IS

Arabidopsis Description

ATOFP12ovate family protein 12 [Source:TAIR;Acc:AT1G05420]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.