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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 2
  • plastid 3
  • mitochondrion 3
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY29776 Canola plastid 90.37 89.89
AT4G14860.1 Thale cress plastid 67.38 69.23
VIT_05s0020g03520.t01 Wine grape plastid 37.97 31.84
KRH35514 Soybean plastid 27.81 28.89
CDY10106 Canola cytosol 33.16 28.7
GSMUA_Achr3P30930_001 Banana mitochondrion 31.55 28.1
KRG91320 Soybean plastid 28.34 27.89
GSMUA_Achr4P07580_001 Banana plastid 31.02 27.36
CDY06168 Canola cytosol, mitochondrion 33.69 27.27
Solyc09g082080.1.1 Tomato cytosol, mitochondrion 30.48 27.01
CDY10024 Canola nucleus 32.62 26.87
CDY12233 Canola mitochondrion 32.62 25.85
CDY47289 Canola cytosol 32.62 25.85
CDY64911 Canola cytosol 32.62 25.74
HORVU4Hr1G073070.1 Barley mitochondrion 28.34 25.73
PGSC0003DMT400082125 Potato cytosol, mitochondrion 29.95 25.45
TraesCS4B01G275200.1 Wheat mitochondrion 27.27 25.0
Zm00001d027739_P001 Maize nucleus, plastid 24.06 24.59
Os03t0159400-01 Rice mitochondrion 27.27 23.83
EER92828 Sorghum mitochondrion 26.74 23.81
TraesCS4A01G030800.1 Wheat mitochondrion 25.67 23.41
TraesCS4D01G273800.1 Wheat mitochondrion 25.13 22.82
CDX87287 Canola nucleus, plastid 25.67 16.78
CDY58777 Canola nucleus, plastid 24.6 16.14
CDY37564 Canola plastid 23.53 14.92
CDY41111 Canola plastid 23.53 14.77
Protein Annotations
EnsemblPlants:CDY42794EnsemblPlantsGene:GSBRNA2T00075358001GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0045892InterPro:IPR006458InterPro:OvateInterPro:Ovate_CPANTHER:PTHR33057
PANTHER:PTHR33057:SF21PFAM:PF04844PFscan:PS51754ProteinID:CDY42794ProteinID:CDY42794.1SEG:seg
TIGRFAMs:TIGR01568UniParc:UPI0004EDE42BUniProt:A0A078HZM3MapMan:15.5.37::
Description
BnaC01g22720DBnaC01g22720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZM3]
Coordinates
chrLK032534:+:197644..198282
Molecular Weight (calculated)
20904.6 Da
IEP (calculated)
7.158
GRAVY (calculated)
-0.321
Length
187 amino acids
Sequence
(BLAST)
001: MSTFLRKKLH LCFSSSGVVS PSIPSSPIVV PNHNPPSHHH HHTPSIFINN FNSLYDHLSV SSPLHRNDKF TSVAAALTTP KSGEIGSNEN YAVVSKLLSD
101: GTAILKHIDS PDPCRDFGRS MREMVEARDP TRDDVSDREY LNELLFCYLS LNPKHTHKFI VSAFADTLLW LLSQSSSPEY YPLSQSI
Best Arabidopsis Sequence Match ( AT4G14860.1 )
(BLAST)
001: MSNFLRKKLH LCFSSSGGLS PSIPSSPIIV SNHNAQSHPH HTPSIFINNF NSLYDQLSVS SPLHRRHSSE NPAGVFSTNR REEEEEDETT TSVSKLLSGG
101: TAIMKHIESP DPYRDFGRSM REMVEARDLT RDVVADREYL HELLFCYLYL NPKHTHRFIV SAFADTLLWL LSPSPSPEHF LS
Arabidopsis Description
OFP11Transcription repressor OFP11 [Source:UniProtKB/Swiss-Prot;Acc:O23341]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.