CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42794	Canola	plastid	89.89	90.37
Bra036908.1-P	Field mustard	plastid	95.74	84.11
AT4G14860.1	Thale cress	plastid	69.15	71.43
VIT_05s0020g03520.t01	Wine grape	plastid	37.23	31.39
KRH35514	Soybean	plastid	27.13	28.33
CDY10106	Canola	cytosol	32.45	28.24
KRG91320	Soybean	plastid	27.66	27.37
CDY06168	Canola	cytosol, mitochondrion	33.51	27.27
GSMUA_Achr3P30930_001	Banana	mitochondrion	30.32	27.14
CDY10024	Canola	nucleus	32.45	26.87
Solyc09g082080.1.1	Tomato	cytosol, mitochondrion	29.79	26.54
GSMUA_Achr4P07580_001	Banana	plastid	29.79	26.42
CDY47289	Canola	cytosol	31.91	25.42
CDY12233	Canola	mitochondrion	31.38	25.0
TraesCS4B01G275200.1	Wheat	mitochondrion	27.13	25.0
PGSC0003DMT400082125	Potato	cytosol, mitochondrion	29.26	25.0
Zm00001d027739_P001	Maize	nucleus, plastid	23.94	24.59
CDY64911	Canola	cytosol	30.85	24.47
HORVU4Hr1G073070.1	Barley	mitochondrion	26.6	24.27
EER92828	Sorghum	mitochondrion	26.6	23.81
TraesCS4A01G030800.1	Wheat	mitochondrion	25.53	23.41
TraesCS4D01G273800.1	Wheat	mitochondrion	25.0	22.82
Os03t0159400-01	Rice	mitochondrion	25.53	22.43
CDX87287	Canola	nucleus, plastid	24.47	16.08
CDY58777	Canola	nucleus, plastid	23.4	15.44
CDY37564	Canola	plastid	22.87	14.58
CDY41111	Canola	plastid	22.87	14.43

Protein Annotations

EnsemblPlants:CDY29776	EnsemblPlantsGene:GSBRNA2T00043641001	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045892	InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C	PANTHER:PTHR33057
PANTHER:PTHR33057:SF21	PFAM:PF04844	PFscan:PS51754	ProteinID:CDY29776	ProteinID:CDY29776.1	SEG:seg
TIGRFAMs:TIGR01568	UniParc:UPI0004EE81D1	UniProt:A0A078GW74	MapMan:15.5.37	:	:

Description

BnaA01g18900DBnaA01g18900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GW74]

Coordinates

chrLK032243:+:466798..467442

Molecular Weight (calculated)

20963.6 Da

IEP (calculated)

7.116

GRAVY (calculated)

-0.362

Length

188 amino acids

Sequence
(BLAST)

001: MSTFLRKKLH LCFSSSGVVS PSIPSSPIVV PNHNPPSNHH HHHTPSIFIN NFNSLYDHLS VSSPLHRNDK FTSVAAALTT PKSGDTGSNE SYTVVSKLLS
101: DGTAIMKQID SPDPCRDFGR SMREMVEARD PTRDDVSDRE YLNELLFCYL SLNPKHTHKF IVSAFADTLL WLLSPSSSPE YYSLSQSI

Best Arabidopsis Sequence Match ( AT4G14860.1 )
(BLAST)

001: MSNFLRKKLH LCFSSSGGLS PSIPSSPIIV SNHNAQSHPH HTPSIFINNF NSLYDQLSVS SPLHRRHSSE NPAGVFSTNR REEEEEDETT TSVSKLLSGG
101: TAIMKHIESP DPYRDFGRSM REMVEARDLT RDVVADREYL HELLFCYLYL NPKHTHRFIV SAFADTLLWL LSPSPSPEHF LS

Arabidopsis Description

OFP11Transcription repressor OFP11 [Source:UniProtKB/Swiss-Prot;Acc:O23341]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.