CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027739_P001	Maize	nucleus, plastid	54.76	62.84
Os03t0159400-01	Rice	mitochondrion	62.86	61.68
TraesCS4B01G275200.1	Wheat	mitochondrion	58.1	59.8
TraesCS4A01G030800.1	Wheat	mitochondrion	57.14	58.54
TraesCS4D01G273800.1	Wheat	mitochondrion	56.67	57.77
HORVU4Hr1G073070.1	Barley	mitochondrion	55.71	56.8
GSMUA_Achr4P07580_001	Banana	plastid	41.9	41.51
GSMUA_Achr3P30930_001	Banana	mitochondrion	41.43	41.43
KRH35514	Soybean	plastid	28.57	33.33
KRG91320	Soybean	plastid	30.0	33.16
KRH71408	Soybean	cytosol	28.57	29.41
VIT_05s0020g03520.t01	Wine grape	plastid	30.48	28.7
CDY10106	Canola	cytosol	28.57	27.78
PGSC0003DMT400049756	Potato	mitochondrion	30.0	27.63
Solyc09g082080.1.1	Tomato	cytosol, mitochondrion	27.14	27.01
CDY42794	Canola	plastid	23.81	26.74
CDY29776	Canola	plastid	23.81	26.6
KRH32029	Soybean	cytosol	27.62	26.48
CDY10024	Canola	nucleus	28.57	26.43
PGSC0003DMT400082125	Potato	cytosol, mitochondrion	27.62	26.36
Bra032464.1-P	Field mustard	nucleus, plastid	28.1	25.99
KRG95550	Soybean	mitochondrion, plastid	32.38	25.95
AT4G14860.1	Thale cress	plastid	22.38	25.82
CDY06168	Canola	cytosol, mitochondrion	28.1	25.54
CDY12233	Canola	mitochondrion	28.1	25.0
CDY47289	Canola	cytosol	28.1	25.0
Bra005611.1-P	Field mustard	cytosol	28.1	24.89
CDY64911	Canola	cytosol	28.1	24.89
KRH67233	Soybean	nucleus, plastid	29.52	24.8
AT2G32100.1	Thale cress	nucleus	28.57	24.59
AT1G05420.2	Thale cress	mitochondrion, plastid	28.1	24.38
Bra036908.1-P	Field mustard	plastid	23.81	23.36
EES00995	Sorghum	nucleus	21.9	19.57
EER92063	Sorghum	nucleus	20.95	18.64
EER96623	Sorghum	nucleus	22.86	17.84

Protein Annotations

MapMan:15.5.37	EntrezGene:8085455	UniProt:C5WXS0	EnsemblPlants:EER92828	ProteinID:EER92828	ProteinID:EER92828.1
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892
InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C	PFAM:PF04844	PFscan:PS51754	PANTHER:PTHR33057
PANTHER:PTHR33057:SF21	EnsemblPlantsGene:SORBI_3001G497800	TIGRFAMs:TIGR01568	UniParc:UPI0001A82B37	RefSeq:XP_002465830.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:76760520..76761152

Molecular Weight (calculated)

21685.1 Da

IEP (calculated)

6.946

GRAVY (calculated)

-0.209

Length

210 amino acids

Sequence
(BLAST)

001: MLGCFSRLRR PTTTGSSAAP EPMPAAASDE ASTSAASTTS AAGSTSPCSS SSSARCNKDD DHAGNNDSNS IVAVGKNPSA LSEFGLSSAI ASRRFFLSSP
101: GRSNSIVDSS AHGAAAAAAA LGVGVGAAGV AVPTYSPDPH ADFLRSMEEM AAALRLDARR RGDRARLHEL LLCYLALNDR RAHKYVVSAF TDLLLRLTAA
201: ANLDDDHHHD

Best Arabidopsis Sequence Match ( AT1G05420.2 )
(BLAST)

001: MLNTYSLTLF LTKTKTMPRV MWKNFHLCFP SNLTKPSSSP SGATSDDPNR PSILLINNFN LLYDDSSAAH RRLSKPLIHD VEPSSTFTAS TSTAANSSSS
101: SASYDDSDNY GFAPDDDSPP PDLTAVLASR RFFFSSPGCS NSITDSPDLR CRDNYDTATR LLTGGTAVKH YVQSPDPYND FRRSMQEMID AVTNAGDLRR
201: YEFLHELLLS YLSLNAADTH KFIIRAFADI LVSLLSDGHR IS

Arabidopsis Description

ATOFP12ovate family protein 12 [Source:TAIR;Acc:AT1G05420]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.