Factsheet for VIT_05s0020g03520.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g082080.1.1	Tomato	cytosol, mitochondrion	42.15	44.55
KRG91320	Soybean	plastid	36.32	42.63
KRH35514	Soybean	plastid	33.63	41.67
PGSC0003DMT400082125	Potato	cytosol, mitochondrion	40.81	41.36
CDY06168	Canola	cytosol, mitochondrion	42.6	41.13
Bra032464.1-P	Field mustard	nucleus, plastid	41.7	40.97
CDY10024	Canola	nucleus	41.26	40.53
AT4G14860.1	Thale cress	plastid	32.74	40.11
CDY10106	Canola	cytosol	37.67	38.89
GSMUA_Achr4P07580_001	Banana	plastid	36.32	38.21
AT1G05420.2	Thale cress	mitochondrion, plastid	41.26	38.02
CDY42794	Canola	plastid	31.84	37.97
CDY29776	Canola	plastid	31.39	37.23
GSMUA_Achr3P30930_001	Banana	mitochondrion	34.98	37.14
CDY47289	Canola	cytosol	38.12	36.02
CDY12233	Canola	mitochondrion	37.22	35.17
Bra005611.1-P	Field mustard	cytosol	37.22	35.02
CDY64911	Canola	cytosol	36.77	34.6
HORVU4Hr1G073070.1	Barley	mitochondrion	31.39	33.98
AT2G32100.1	Thale cress	nucleus	35.87	32.79
Bra036908.1-P	Field mustard	plastid	31.39	32.71
Os03t0159400-01	Rice	mitochondrion	30.49	31.78
Zm00001d027739_P001	Maize	nucleus, plastid	26.01	31.69
TraesCS4B01G275200.1	Wheat	mitochondrion	28.7	31.37
EER92828	Sorghum	mitochondrion	28.7	30.48
TraesCS4A01G030800.1	Wheat	mitochondrion	27.8	30.24
TraesCS4D01G273800.1	Wheat	mitochondrion	27.8	30.1
VIT_09s0002g04630.t01	Wine grape	mitochondrion, nucleus	29.15	23.38

Protein Annotations

EntrezGene:100261343	wikigene:100261343	MapMan:15.5.37	EMBL:AM436617	ProteinID:CAN67178	ProteinID:CAN67178.1
ProteinID:CCB50429	ProteinID:CCB50429.1	UniProt:F6HDQ8	EMBL:FN595749	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892	InterPro:IPR006458	EntrezGene:LOC100261343
wikigene:LOC100261343	InterPro:Ovate	InterPro:Ovate_C	PFAM:PF04844	PFscan:PS51754	PANTHER:PTHR33057
PANTHER:PTHR33057:SF21	TIGRFAMs:TIGR01568	UniParc:UPI00015C77A3	ArrayExpress:VIT_05s0020g03520	EnsemblPlantsGene:VIT_05s0020g03520	EnsemblPlants:VIT_05s0020g03520.t01
RefSeq:XP_002278578	RefSeq:XP_002278578.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5:-:5284997..5285845

Molecular Weight (calculated)

24707.5 Da

IEP (calculated)

6.300

GRAVY (calculated)

-0.439

Length

223 amino acids

Sequence
(BLAST)

001: MSSIIWKNFN LCLSKLKCFP TTLPSSPPSK HDHNRHPSSS SSSSISSTSS VLIKNFNSLY DLTSDSTSKS LTRTTDDFLS TSEDSVDSES PPDFATVFAS
101: QRFFFSSPGR SNSIFEASES PPESDSIVNG GVAVHTYSPN PYEDFRRSMQ EMAEARELRD VAADWDYLHE LLLCYLTLNP KHTHKFIIRA FADLIVCLMS
201: STASDGRRGS AGPQRHGASQ WFA

Best Arabidopsis Sequence Match ( AT1G05420.2 )
(BLAST)

001: MLNTYSLTLF LTKTKTMPRV MWKNFHLCFP SNLTKPSSSP SGATSDDPNR PSILLINNFN LLYDDSSAAH RRLSKPLIHD VEPSSTFTAS TSTAANSSSS
101: SASYDDSDNY GFAPDDDSPP PDLTAVLASR RFFFSSPGCS NSITDSPDLR CRDNYDTATR LLTGGTAVKH YVQSPDPYND FRRSMQEMID AVTNAGDLRR
201: YEFLHELLLS YLSLNAADTH KFIIRAFADI LVSLLSDGHR IS

Arabidopsis Description

ATOFP12ovate family protein 12 [Source:TAIR;Acc:AT1G05420]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.