CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 4
extracellular 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64911	Canola	cytosol	85.17	84.81
AT2G32100.1	Thale cress	nucleus	61.44	59.43
CDY10024	Canola	nucleus	48.31	50.22
CDY06168	Canola	cytosol, mitochondrion	49.15	50.22
CDY10106	Canola	cytosol	43.64	47.69
CDY47289	Canola	cytosol	43.64	43.64
VIT_05s0020g03520.t01	Wine grape	plastid	35.17	37.22
KRH35514	Soybean	plastid	27.54	36.11
KRG91320	Soybean	plastid	28.39	35.26
Solyc09g082080.1.1	Tomato	cytosol, mitochondrion	31.36	35.07
PGSC0003DMT400082125	Potato	cytosol, mitochondrion	30.93	33.18
Zm00001d027739_P001	Maize	nucleus, plastid	25.42	32.79
CDY42794	Canola	plastid	25.85	32.62
GSMUA_Achr3P30930_001	Banana	mitochondrion	27.97	31.43
CDY29776	Canola	plastid	25.0	31.38
GSMUA_Achr4P07580_001	Banana	plastid	27.54	30.66
TraesCS4B01G275200.1	Wheat	mitochondrion	25.85	29.9
TraesCS4D01G273800.1	Wheat	mitochondrion	25.42	29.13
HORVU4Hr1G073070.1	Barley	mitochondrion	25.0	28.64
TraesCS4A01G030800.1	Wheat	mitochondrion	24.58	28.29
EER92828	Sorghum	mitochondrion	25.0	28.1
Os03t0159400-01	Rice	mitochondrion	24.58	27.1
CDY37564	Canola	plastid	20.34	16.27
CDX87287	Canola	nucleus, plastid	19.49	16.08
CDY58777	Canola	nucleus, plastid	19.07	15.79
CDY41111	Canola	plastid	19.92	15.77

Protein Annotations

EnsemblPlants:CDY12233	EnsemblPlantsGene:GSBRNA2T00061267001	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045892	InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C	PANTHER:PTHR33057
PANTHER:PTHR33057:SF21	PFAM:PF04844	PFscan:PS51754	ProteinID:CDY12233	ProteinID:CDY12233.1	SEG:seg
TIGRFAMs:TIGR01568	UniParc:UPI0004EDD867	UniProt:A0A078FJE0	MapMan:15.5.37	:	:

Description

BnaC04g12630DBnaC04g12630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJE0]

Coordinates

chrLK032018:-:647786..648793

Molecular Weight (calculated)

26261.5 Da

IEP (calculated)

5.521

GRAVY (calculated)

-0.449

Length

236 amino acids

Sequence
(BLAST)

001: MPKIMWKSLH LCFPSNLTKC YSSPCLPPSA AAAEDDDPSR PSIVLINNFN LLYHNDHNNY HHRVVDLPSS STATTFSSSA TSSHESESQD ISPELSAAFA
101: SRRFFFSSPG RSNAITDSPE TRSRELSDNS DSASIKTTKK TTYDTSVNTT RLLSGGSAVK QHVYSPDPLT DFRRSMQEMI DAAIEAGDLI HPDDGYDYLN
201: ELLLSYLALN PTDMHKFIIR AFSDIMVSLL SEERRI

Best Arabidopsis Sequence Match ( AT2G32100.1 )
(BLAST)

001: MPKILWKSLH LCFPSNLTKC YSSPCIPPSS ADPDGIIQPN RPSIVLLNNF NLLYHNDNHH HPHRVIDLPS SSTTTTPAAT SSSSTSSYES DISPDVSAAF
101: ASRRFFFSSP GRSNAITDSP EPRSREFSDN YDDATITSTK KKKKKVYDNS VTTTTTRLIS GGTAVTQHVD SPDPLTDFRR SMQEMIDAAI DAGELSRDPN
201: DGYDFLDELL LTYLSLNPAD THKFVIRAFS DILVSLLSEE RRIC

Arabidopsis Description

OFP16Transcription repressor OFP16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKY9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.