CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10106	Canola	cytosol	87.71	95.83
CDY06168	Canola	cytosol, mitochondrion	63.56	64.94
CDY10024	Canola	nucleus	60.59	63.0
AT1G05420.2	Thale cress	mitochondrion, plastid	61.44	59.92
CDY12233	Canola	mitochondrion	43.64	43.64
CDY64911	Canola	cytosol	43.64	43.46
VIT_05s0020g03520.t01	Wine grape	plastid	36.02	38.12
Solyc09g082080.1.1	Tomato	cytosol, mitochondrion	32.63	36.49
KRH35514	Soybean	plastid	27.54	36.11
KRG91320	Soybean	plastid	28.81	35.79
PGSC0003DMT400082125	Potato	cytosol, mitochondrion	31.36	33.64
CDY42794	Canola	plastid	25.85	32.62
CDY29776	Canola	plastid	25.42	31.91
GSMUA_Achr3P30930_001	Banana	mitochondrion	27.97	31.43
GSMUA_Achr4P07580_001	Banana	plastid	27.97	31.13
Zm00001d027739_P001	Maize	nucleus, plastid	23.73	30.6
TraesCS4B01G275200.1	Wheat	mitochondrion	25.0	28.92
TraesCS4A01G030800.1	Wheat	mitochondrion	24.58	28.29
HORVU4Hr1G073070.1	Barley	mitochondrion	24.58	28.16
TraesCS4D01G273800.1	Wheat	mitochondrion	24.58	28.16
EER92828	Sorghum	mitochondrion	25.0	28.1
Os03t0159400-01	Rice	mitochondrion	24.58	27.1
CDY58777	Canola	nucleus, plastid	19.07	15.79
CDX87287	Canola	nucleus, plastid	19.07	15.73
CDY37564	Canola	plastid	17.8	14.24
CDY41111	Canola	plastid	17.37	13.76

Protein Annotations

EnsemblPlants:CDY47289	EnsemblPlantsGene:GSBRNA2T00087099001	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045892	InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C	PANTHER:PTHR33057
PANTHER:PTHR33057:SF21	PFAM:PF04844	PFscan:PS51754	ProteinID:CDY47289	ProteinID:CDY47289.1	SEG:seg
TIGRFAMs:TIGR01568	UniParc:UPI0004EEBF66	UniProt:A0A078ID56	MapMan:15.5.37	:	:

Description

BnaA10g03570DBnaA10g03570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ID56]

Coordinates

chrLK032705:+:154167..154877

Molecular Weight (calculated)

26064.3 Da

IEP (calculated)

6.016

GRAVY (calculated)

-0.422

Length

236 amino acids

Sequence
(BLAST)

001: MPRTMWKDFH LCFPTNLIKP SSEAATSSQE PNRPSILLIN NFNHLYDDST ATGRRISKPI IEVIPPSSIT TATTFTASTS TSTTGNSSSS SSLYESDNYG
101: FAPEDSPPPD LTAVLATRRF FFSSPGRSNS ITDSPDLRPR FEYKTSTTTT AATRLLTGGA AVKQCVQSPD PYNDFRRSMQ EMLDAVTDAG DARRYEFLHE
201: LLLSYLSLNA EDTHKFIIRA FADVLVSLLS DGHRTN

Best Arabidopsis Sequence Match ( AT1G05420.2 )
(BLAST)

001: MLNTYSLTLF LTKTKTMPRV MWKNFHLCFP SNLTKPSSSP SGATSDDPNR PSILLINNFN LLYDDSSAAH RRLSKPLIHD VEPSSTFTAS TSTAANSSSS
101: SASYDDSDNY GFAPDDDSPP PDLTAVLASR RFFFSSPGCS NSITDSPDLR CRDNYDTATR LLTGGTAVKH YVQSPDPYND FRRSMQEMID AVTNAGDLRR
201: YEFLHELLLS YLSLNAADTH KFIIRAFADI LVSLLSDGHR IS

Arabidopsis Description

ATOFP12ovate family protein 12 [Source:TAIR;Acc:AT1G05420]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.