CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80491
CDX88165

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79960.1	CDX80491	AT5G25220.1	15781858
AT1G79960.1	CDX88165	AT5G25220.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035202.1-P	Field mustard	nucleus, plastid	96.14	95.8
CDX87287	Canola	nucleus, plastid	95.79	95.45
CDY41111	Canola	plastid	60.7	58.05
AT1G79960.1	Thale cress	nucleus, plastid	59.3	57.48
CDY37564	Canola	plastid	59.3	57.29
KRH09849	Soybean	mitochondrion, nucleus	32.98	37.75
VIT_09s0002g04630.t01	Wine grape	mitochondrion, nucleus	32.63	33.45
Solyc03g120190.2.1	Tomato	plastid	30.53	31.64
PGSC0003DMT400014515	Potato	nucleus	29.47	29.17
KRH47051	Soybean	nucleus	28.07	28.37
Zm00001d044357_P001	Maize	cytosol	23.51	28.15
TraesCS6D01G041100.1	Wheat	nucleus, plastid	23.51	28.03
HORVU6Hr1G006440.1	Barley	cytosol	23.86	27.53
EES00995	Sorghum	nucleus	22.46	27.23
TraesCS6A01G035700.1	Wheat	nucleus	22.81	26.75
EER92063	Sorghum	nucleus	21.75	26.27
TraesCS6B01G050100.1	Wheat	nucleus	21.75	25.94
GSMUA_Achr8P04020_001	Banana	mitochondrion	23.51	25.57
KRH44372	Soybean	nucleus	16.49	25.0
CDY42794	Canola	plastid	16.14	24.6
Zm00001d020198_P001	Maize	nucleus	21.05	23.44
CDY29776	Canola	plastid	15.44	23.4
TraesCS5D01G195300.1	Wheat	nucleus	21.75	22.79
TraesCS5B01G187700.1	Wheat	nucleus	21.4	22.51
HORVU5Hr1G056810.1	Barley	nucleus	21.05	22.3
EER96623	Sorghum	nucleus	20.7	21.93
TraesCS5A01G195700.1	Wheat	nucleus, plastid	20.7	21.69
CDY10106	Canola	cytosol	15.79	20.83
CDY64911	Canola	cytosol	16.14	19.41
CDY12233	Canola	mitochondrion	15.79	19.07
CDY47289	Canola	cytosol	15.79	19.07
CDY06168	Canola	cytosol, mitochondrion	14.04	17.32
CDY10024	Canola	nucleus	13.33	16.74

Protein Annotations

EnsemblPlants:CDY58777	EnsemblPlantsGene:GSBRNA2T00025132001	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045892	InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C	PANTHER:PTHR33057
PANTHER:PTHR33057:SF29	PFAM:PF04844	PFscan:PS51754	ProteinID:CDY58777	ProteinID:CDY58777.1	SEG:seg
TIGRFAMs:TIGR01568	UniParc:UPI0004EADBD9	UniProt:A0A078J4F4	MapMan:15.5.37	:	:

Description

BnaCnng33780DBnaCnng33780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J4F4]

Coordinates

chrLK033698:+:28552..29409

Molecular Weight (calculated)

32606.4 Da

IEP (calculated)

9.671

GRAVY (calculated)

-0.952

Length

285 amino acids

Sequence
(BLAST)

001: MPNPLQKSLH GYLSKIKKET GKLQVSNSFS SSKKWVLAGC KHPKKLSFSF KHRRRPSKTR FNDDHVNQDP GHAATLSDID RFLEENFKSL CIRDEKGEED
101: DKSKGKREQQ SSSSDEDDTD DYSHRFERTW GPAVCDSPKL PRTERLSPPP GSSEGRASMY TTSEEGPSSR SKSSSLVLPE KCIAVLRYTE EPQEDFKRSM
201: VSMMESKLGG SEVDWDLMEE LLFCYLDLNN KKSHKFILSA FVDLIISLRD KEKNITRKGL VRSLSTRAAR ERLRKRMASS DAFRN

Best Arabidopsis Sequence Match ( AT1G79960.1 )
(BLAST)

001: MPNPLQKSLH GYLSKIKKET GKLQLSSSHS FSSSKNWVLG KHPKKLSFSF KHRRRSSKTR FSKEEPVYHQ DSAHAATLSD IDRFLEENFK SLCIRDDQED
101: DQHQARVTKN KEKRESSSDD SDDDDDDDDY RHRFERTWGH AVYDSPKQPP DLLRTERLSP PPGSSEGRPS METTSTSSER QSRSTLVLPE NCIAVLRYTD
201: EPQEDFRQSM VEMMESKLGM RESEVDWDLM EELLFCYLDL NDKKSHKFIL SAFVDLIIAL REKEKRITRK GHVRSLSTRA ARDRLRKRMI MSDN

Arabidopsis Description

OFP14OFP14 [Source:UniProtKB/TrEMBL;Acc:A0A178W942]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.