CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80491
CDX88165

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79960.1	CDX80491	AT5G25220.1	15781858
AT1G79960.1	CDX88165	AT5G25220.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008500.1-P	Field mustard	plastid	99.66	99.66
CDY41111	Canola	plastid	89.49	88.59
CDX87287	Canola	nucleus, plastid	59.32	61.19
CDY58777	Canola	nucleus, plastid	57.29	59.3
AT1G79960.1	Thale cress	nucleus, plastid	45.76	45.92
KRH09849	Soybean	mitochondrion, nucleus	26.1	30.92
Solyc03g120190.2.1	Tomato	plastid	28.81	30.91
PGSC0003DMT400014515	Potato	nucleus	29.15	29.86
VIT_09s0002g04630.t01	Wine grape	mitochondrion, nucleus	28.14	29.86
EES00995	Sorghum	nucleus	21.36	26.81
EER92063	Sorghum	nucleus	21.02	26.27
GSMUA_Achr8P04020_001	Banana	mitochondrion	22.71	25.57
TraesCS6A01G035700.1	Wheat	nucleus	21.02	25.51
KRH47051	Soybean	nucleus	24.07	25.18
TraesCS6D01G041100.1	Wheat	nucleus, plastid	20.34	25.1
Zm00001d044357_P001	Maize	cytosol	19.66	24.37
HORVU6Hr1G006440.1	Barley	cytosol	20.0	23.89
CDY42794	Canola	plastid	14.92	23.53
TraesCS6B01G050100.1	Wheat	nucleus	18.64	23.01
CDY29776	Canola	plastid	14.58	22.87
KRH44372	Soybean	nucleus	14.58	22.87
Zm00001d020198_P001	Maize	nucleus	19.66	22.66
CDY64911	Canola	cytosol	16.95	21.1
CDY12233	Canola	mitochondrion	16.27	20.34
CDY06168	Canola	cytosol, mitochondrion	15.59	19.91
HORVU5Hr1G056810.1	Barley	nucleus	17.97	19.7
EER96623	Sorghum	nucleus	17.97	19.7
TraesCS5B01G187700.1	Wheat	nucleus	17.97	19.56
TraesCS5A01G195700.1	Wheat	nucleus, plastid	17.97	19.49
TraesCS5D01G195300.1	Wheat	nucleus	17.97	19.49
CDY10106	Canola	cytosol	14.24	19.44
CDY10024	Canola	nucleus	14.92	19.38
CDY47289	Canola	cytosol	14.24	17.8

Protein Annotations

EnsemblPlants:CDY37564	EnsemblPlantsGene:GSBRNA2T00064188001	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045892	InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C	PANTHER:PTHR33057
PANTHER:PTHR33057:SF29	PFAM:PF04844	PFscan:PS51754	ProteinID:CDY37564	ProteinID:CDY37564.1	SEG:seg
TIGRFAMs:TIGR01568	UniParc:UPI0004EF3E6F	UniProt:A0A078HJW3	MapMan:15.5.37	:	:

Description

BnaA02g20060DBnaA02g20060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJW3]

Coordinates

chrLK032403:-:68775..69662

Molecular Weight (calculated)

34168.1 Da

IEP (calculated)

9.569

GRAVY (calculated)

-1.047

Length

295 amino acids

Sequence
(BLAST)

001: MPNPVQQSVY GYLSKIKREA GKLQSSSSKS LSSSKKWVLS YKLHKKLSSL TNVRRPSKTS RFNDDHPQDP GQAATLSDID RFLEENFKSL CIRDGGEEGE
101: EDHRRRMSKK KEKRDQSSDD SSDTDEDDYY RHRFQRTWEP AVYDSPKLPD PRRRTGRLSP PPGSSEGTPS MYTTPEEERR SLRSHSSSLV LPENCIAVLR
201: CTEEPQEDFR RSMVEMMESK LGGGEVDWDL MEELLFCYLD LNHKKSHKFI LSAFVDLIIS LRVKEKRVTR KSLEMSLSTR AARDRFSKRS YASRN

Best Arabidopsis Sequence Match ( AT1G79960.1 )
(BLAST)

001: MPNPLQKSLH GYLSKIKKET GKLQLSSSHS FSSSKNWVLG KHPKKLSFSF KHRRRSSKTR FSKEEPVYHQ DSAHAATLSD IDRFLEENFK SLCIRDDQED
101: DQHQARVTKN KEKRESSSDD SDDDDDDDDY RHRFERTWGH AVYDSPKQPP DLLRTERLSP PPGSSEGRPS METTSTSSER QSRSTLVLPE NCIAVLRYTD
201: EPQEDFRQSM VEMMESKLGM RESEVDWDLM EELLFCYLDL NDKKSHKFIL SAFVDLIIAL REKEKRITRK GHVRSLSTRA ARDRLRKRMI MSDN

Arabidopsis Description

OFP14OFP14 [Source:UniProtKB/TrEMBL;Acc:A0A178W942]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.