Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G195300.1 | Wheat | nucleus | 83.03 | 82.72 |
| HORVU5Hr1G056810.1 | Barley | nucleus | 77.86 | 78.44 |
| TraesCS5A01G195700.1 | Wheat | nucleus, plastid | 73.8 | 73.53 |
| Zm00001d020198_P001 | Maize | nucleus | 45.02 | 47.66 |
| EER96623 | Sorghum | nucleus | 43.17 | 43.49 |
| GSMUA_Achr8P04020_001 | Banana | mitochondrion | 28.78 | 29.77 |
| KRH09849 | Soybean | mitochondrion, nucleus | 25.83 | 28.11 |
| TraesCS6B01G050100.1 | Wheat | nucleus | 22.88 | 25.94 |
| TraesCS4B01G275200.1 | Wheat | mitochondrion | 18.82 | 25.0 |
| AT1G79960.1 | Thale cress | nucleus, plastid | 24.72 | 22.79 |
| VIT_09s0002g04630.t01 | Wine grape | mitochondrion, nucleus | 23.25 | 22.66 |
| CDX87287 | Canola | nucleus, plastid | 22.88 | 21.68 |
| Bra035202.1-P | Field mustard | nucleus, plastid | 22.88 | 21.68 |
| Solyc03g120190.2.1 | Tomato | plastid | 21.77 | 21.45 |
| CDY58777 | Canola | nucleus, plastid | 22.51 | 21.4 |
| KRH47051 | Soybean | nucleus | 21.4 | 20.57 |
| PGSC0003DMT400014515 | Potato | nucleus | 21.4 | 20.14 |
| KRH44372 | Soybean | nucleus | 12.92 | 18.62 |
| CDY37564 | Canola | plastid | 19.56 | 17.97 |
| Bra008500.1-P | Field mustard | plastid | 19.56 | 17.97 |
| CDY41111 | Canola | plastid | 19.56 | 17.79 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G187700.1 | EnsemblPlantsGene:TraesCS5B01G187700 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045892 | InterPro:IPR006458 | InterPro:Ovate | InterPro:Ovate_C | PANTHER:PTHR33057 |
| PANTHER:PTHR33057:SF29 | PFAM:PF04844 | PFscan:PS51754 | SEG:seg | TIGRFAMs:TIGR01568 | MapMan:15.5.37 |
Description
No Description!
Coordinates
chr5B:+:339539521..339540336
Molecular Weight (calculated)
29168.9 Da
IEP (calculated)
7.739
GRAVY (calculated)
-0.754
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGMEDEAKK KKRRSKKRAR LKSFLHFPKA LKKLHGHGRP SANDNPSPSP SAAAAAGSLL SACMHPRTNS FSSGVRQRHV AAGNRDGHDD DDGALAVNFR
101: SLRVGPTAVP DDDDDGNDED GSSTQEDDGG SESVGDDVVA GTAAMKVVSG GGGGVAVVTL SVAPYEDFRR SMREMADAHA RMEAARVGTR AVPAVDWDFM
201: EELLFCYLQL NDRAVHKEIL RAFTDTVAAL RGRRRAPAPK PKSKRTRQPR RGARGYGVDD DDDVEAVDSN S
101: SLRVGPTAVP DDDDDGNDED GSSTQEDDGG SESVGDDVVA GTAAMKVVSG GGGGVAVVTL SVAPYEDFRR SMREMADAHA RMEAARVGTR AVPAVDWDFM
201: EELLFCYLQL NDRAVHKEIL RAFTDTVAAL RGRRRAPAPK PKSKRTRQPR RGARGYGVDD DDDVEAVDSN S
001: MPNPLQKSLH GYLSKIKKET GKLQLSSSHS FSSSKNWVLG KHPKKLSFSF KHRRRSSKTR FSKEEPVYHQ DSAHAATLSD IDRFLEENFK SLCIRDDQED
101: DQHQARVTKN KEKRESSSDD SDDDDDDDDY RHRFERTWGH AVYDSPKQPP DLLRTERLSP PPGSSEGRPS METTSTSSER QSRSTLVLPE NCIAVLRYTD
201: EPQEDFRQSM VEMMESKLGM RESEVDWDLM EELLFCYLDL NDKKSHKFIL SAFVDLIIAL REKEKRITRK GHVRSLSTRA ARDRLRKRMI MSDN
101: DQHQARVTKN KEKRESSSDD SDDDDDDDDY RHRFERTWGH AVYDSPKQPP DLLRTERLSP PPGSSEGRPS METTSTSSER QSRSTLVLPE NCIAVLRYTD
201: EPQEDFRQSM VEMMESKLGM RESEVDWDLM EELLFCYLDL NDKKSHKFIL SAFVDLIIAL REKEKRITRK GHVRSLSTRA ARDRLRKRMI MSDN
Arabidopsis Description
OFP14OFP14 [Source:UniProtKB/TrEMBL;Acc:A0A178W942]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.