Factsheet for Solyc03g120190.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g041820.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79960.1	Solyc08g041820.2.1	AT5G25220.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014515	Potato	nucleus	87.27	83.33
KRH09849	Soybean	mitochondrion, nucleus	35.64	39.36
VIT_09s0002g04630.t01	Wine grape	mitochondrion, nucleus	37.09	36.69
GSMUA_Achr8P04020_001	Banana	mitochondrion	31.27	32.82
TraesCS6D01G041100.1	Wheat	nucleus, plastid	28.0	32.22
TraesCS6A01G035700.1	Wheat	nucleus	28.0	31.69
Bra035202.1-P	Field mustard	nucleus, plastid	32.73	31.47
CDX87287	Canola	nucleus, plastid	32.73	31.47
AT1G79960.1	Thale cress	nucleus, plastid	33.09	30.95
CDY58777	Canola	nucleus, plastid	31.64	30.53
TraesCS6B01G050100.1	Wheat	nucleus	26.18	30.13
HORVU6Hr1G006440.1	Barley	cytosol	26.55	29.55
Bra008500.1-P	Field mustard	plastid	30.91	28.81
CDY37564	Canola	plastid	30.91	28.81
Zm00001d044357_P001	Maize	cytosol	24.73	28.57
CDY41111	Canola	plastid	30.91	28.52
Solyc09g082080.1.1	Tomato	cytosol, mitochondrion	21.82	28.44
KRH47051	Soybean	nucleus	29.09	28.37
EES00995	Sorghum	nucleus	24.0	28.09
EER92063	Sorghum	nucleus	23.64	27.54
TraesCS5B01G187700.1	Wheat	nucleus	21.45	21.77
Zm00001d020198_P001	Maize	nucleus	19.64	21.09
HORVU5Hr1G056810.1	Barley	nucleus	20.36	20.82
EER96623	Sorghum	nucleus	20.36	20.82
KRH44372	Soybean	nucleus	14.18	20.74
TraesCS5A01G195700.1	Wheat	nucleus, plastid	20.0	20.22
TraesCS5D01G195300.1	Wheat	nucleus	20.0	20.22

Protein Annotations

EnsemblPlants:Solyc03g120190.2.1	EnsemblPlantsGene:Solyc03g120190.2	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045892	InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C	PANTHER:PTHR33057
PANTHER:PTHR33057:SF29	PFAM:PF04844	PFscan:PS51754	SEG:seg	TIGRFAMs:TIGR01568	UniParc:UPI0002766B87
UniProt:K4BMG8	MapMan:15.5.37	:	:	:	:

Description

No Description!

Coordinates

chr3:+:68649419..68650548

Molecular Weight (calculated)

31134.3 Da

IEP (calculated)

5.483

GRAVY (calculated)

-0.685

Length

275 amino acids

Sequence
(BLAST)

001: MPKQLQKSLS DYLTKKKKKA TAQQTTNSAN KTLSSSTSWL LRGCRHPKTP SFSAVDRKEK NVQGENEAAT LADVDRFVFE NFKSFYYKDD DNEAEIVENP
101: NSLSESPRHI IPPLNHTGSR RFFIAPGSSS SLIEEARTSM TVSDDTGSTS AITITTVTNT NSNELSAIST EYSKETLNAN DFITLVTYSP SPYDDFRQSM
201: QEMMEARLKD QGKINWEFME ELLFCYLDLN DKKSYKYILS AFVDQIVILR ENSGRVPAIS RNVRPLDGEL NQRDT

Best Arabidopsis Sequence Match ( AT1G79960.1 )
(BLAST)

001: MPNPLQKSLH GYLSKIKKET GKLQLSSSHS FSSSKNWVLG KHPKKLSFSF KHRRRSSKTR FSKEEPVYHQ DSAHAATLSD IDRFLEENFK SLCIRDDQED
101: DQHQARVTKN KEKRESSSDD SDDDDDDDDY RHRFERTWGH AVYDSPKQPP DLLRTERLSP PPGSSEGRPS METTSTSSER QSRSTLVLPE NCIAVLRYTD
201: EPQEDFRQSM VEMMESKLGM RESEVDWDLM EELLFCYLDL NDKKSHKFIL SAFVDLIIAL REKEKRITRK GHVRSLSTRA ARDRLRKRMI MSDN

Arabidopsis Description

OFP14OFP14 [Source:UniProtKB/TrEMBL;Acc:A0A178W942]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.