Factsheet for HORVU6Hr1G006440.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU6Hr1G028610.2
HORVU7Hr1G114650.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79960.1	HORVU6Hr1G028610.2	AT5G25220.1	15781858
AT1G79960.1	HORVU7Hr1G114650.2	AT5G25220.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G041100.1	Wheat	nucleus, plastid	78.95	81.59
TraesCS6A01G035700.1	Wheat	nucleus	76.92	78.19
TraesCS6B01G050100.1	Wheat	nucleus	72.87	75.31
EES00995	Sorghum	nucleus	53.85	56.6
EER92063	Sorghum	nucleus	53.04	55.51
Zm00001d044357_P001	Maize	cytosol	52.23	54.2
GSMUA_Achr8P04020_001	Banana	mitochondrion	32.79	30.92
VIT_09s0002g04630.t01	Wine grape	mitochondrion, nucleus	32.39	28.78
KRH09849	Soybean	mitochondrion, nucleus	28.34	28.11
Solyc03g120190.2.1	Tomato	plastid	29.55	26.55
PGSC0003DMT400014515	Potato	nucleus	29.55	25.35
KRH47051	Soybean	nucleus	28.34	24.82
CDY58777	Canola	nucleus, plastid	27.53	23.86
HORVU5Hr1G056810.1	Barley	nucleus	25.91	23.79
CDX87287	Canola	nucleus, plastid	27.13	23.43
Bra035202.1-P	Field mustard	nucleus, plastid	27.13	23.43
AT1G79960.1	Thale cress	nucleus, plastid	27.13	22.79
HORVU4Hr1G073070.1	Barley	mitochondrion	17.41	20.87
CDY41111	Canola	plastid	24.29	20.13
CDY37564	Canola	plastid	23.89	20.0
Bra008500.1-P	Field mustard	plastid	23.89	20.0
KRH44372	Soybean	nucleus	10.53	13.83

Protein Annotations

EnsemblPlants:HORVU6Hr1G006440.1	EnsemblPlantsGene:HORVU6Hr1G006440	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045892	InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C	PANTHER:PTHR33057
PANTHER:PTHR33057:SF29	PFAM:PF04844	PFscan:PS51754	SEG:seg	TIGRFAMs:TIGR01568	UniParc:UPI000B47D9FF
UniProt:A0A287T8E6	MapMan:15.5.37	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:-:13908979..13909722

Molecular Weight (calculated)

27875.8 Da

IEP (calculated)

9.142

GRAVY (calculated)

-0.648

Length

247 amino acids

Sequence
(BLAST)

001: PSSCPRTLDV LVSGKEMEDD RKRAKLRKSL QLCISRKLKK IPPVHIPATI ASSRRLLSTC RLPRTPSLDI HHAATATTNN SGGHAATLSD IDRFLFDNFR
101: SLYIHDRDDN VRFWSSPGTS STSVVHETKP TAGTSSLSDS VTEDTGEAGP GDDTRDDAAI VLFSMDPYTD FRRSMQNMIK MHHGQDSRSL DWDFLEELLF
201: YYLQLNDQSV HRHILKAFAD LTAGTHKDIP ARGKPHWADK RVRSRKY

Best Arabidopsis Sequence Match ( AT1G79960.1 )
(BLAST)

001: MPNPLQKSLH GYLSKIKKET GKLQLSSSHS FSSSKNWVLG KHPKKLSFSF KHRRRSSKTR FSKEEPVYHQ DSAHAATLSD IDRFLEENFK SLCIRDDQED
101: DQHQARVTKN KEKRESSSDD SDDDDDDDDY RHRFERTWGH AVYDSPKQPP DLLRTERLSP PPGSSEGRPS METTSTSSER QSRSTLVLPE NCIAVLRYTD
201: EPQEDFRQSM VEMMESKLGM RESEVDWDLM EELLFCYLDL NDKKSHKFIL SAFVDLIIAL REKEKRITRK GHVRSLSTRA ARDRLRKRMI MSDN

Arabidopsis Description

OFP14OFP14 [Source:UniProtKB/TrEMBL;Acc:A0A178W942]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.