CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG20488
OQU84501

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79960.1	KXG20488	AT5G25220.1	15781858
AT1G79960.1	OQU84501	AT5G25220.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92063	Sorghum	nucleus	85.11	84.75
Zm00001d044357_P001	Maize	cytosol	64.26	63.45
TraesCS6B01G050100.1	Wheat	nucleus	58.3	57.32
TraesCS6D01G041100.1	Wheat	nucleus, plastid	54.89	53.97
TraesCS6A01G035700.1	Wheat	nucleus	55.74	53.91
HORVU6Hr1G006440.1	Barley	cytosol	56.6	53.85
GSMUA_Achr8P04020_001	Banana	mitochondrion	38.3	34.35
KRH09849	Soybean	mitochondrion, nucleus	30.64	28.92
VIT_09s0002g04630.t01	Wine grape	mitochondrion, nucleus	32.34	27.34
Solyc03g120190.2.1	Tomato	plastid	28.09	24.0
PGSC0003DMT400014515	Potato	nucleus	28.51	23.26
EER96623	Sorghum	nucleus	26.38	23.05
CDX87287	Canola	nucleus, plastid	27.66	22.73
Bra035202.1-P	Field mustard	nucleus, plastid	27.66	22.73
CDY58777	Canola	nucleus, plastid	27.23	22.46
AT1G79960.1	Thale cress	nucleus, plastid	27.66	22.11
EER92828	Sorghum	mitochondrion	19.57	21.9
KRH47051	Soybean	nucleus	25.96	21.63
CDY37564	Canola	plastid	26.81	21.36
Bra008500.1-P	Field mustard	plastid	26.38	21.02
CDY41111	Canola	plastid	25.53	20.13
KRH44372	Soybean	nucleus	13.62	17.02

Protein Annotations

MapMan:15.5.37	EntrezGene:8082471	UniProt:C5XPK1	EnsemblPlants:EES00995	ProteinID:EES00995	ProteinID:EES00995.1
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892
InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C	PFAM:PF04844	PFscan:PS51754	PANTHER:PTHR33057
PANTHER:PTHR33057:SF29	EnsemblPlantsGene:SORBI_3003G205000	TIGRFAMs:TIGR01568	UniParc:UPI0001A84985	RefSeq:XP_002455875.1	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:53480309..53481016

Molecular Weight (calculated)

26266.6 Da

IEP (calculated)

6.433

GRAVY (calculated)

-0.585

Length

235 amino acids

Sequence
(BLAST)

001: MEDDRRRTRL RKSLQLYLSR TLKKIPPIHI PSSAISANIT SAHLLSTCRF PRTPSLDLDG DHAANASADD NSKDQAATLS DVDRFLFDNF RSLYIHDNND
101: PSSSAGTSTS VVNETPPTTK TSSSSESALE DIKEARPGEE GGDSAAIVVF SMDPYTDFWR SMQNMIKMHH GCVCHPLDWD FLEELLFFYL QLNDKAVHKH
201: ILRAFADLTA GTHMASSTPG NDQWADKSLR SRKNH

Best Arabidopsis Sequence Match ( AT1G79960.1 )
(BLAST)

001: MPNPLQKSLH GYLSKIKKET GKLQLSSSHS FSSSKNWVLG KHPKKLSFSF KHRRRSSKTR FSKEEPVYHQ DSAHAATLSD IDRFLEENFK SLCIRDDQED
101: DQHQARVTKN KEKRESSSDD SDDDDDDDDY RHRFERTWGH AVYDSPKQPP DLLRTERLSP PPGSSEGRPS METTSTSSER QSRSTLVLPE NCIAVLRYTD
201: EPQEDFRQSM VEMMESKLGM RESEVDWDLM EELLFCYLDL NDKKSHKFIL SAFVDLIIAL REKEKRITRK GHVRSLSTRA ARDRLRKRMI MSDN

Arabidopsis Description

OFP14OFP14 [Source:UniProtKB/TrEMBL;Acc:A0A178W942]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.