CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89055
EER90950
EER91079
EER91090
EER92018
EER92063
EER95833
EER96623
EES00995
EES03882
EES04785
EES18336
KXG20197
KXG20488
KXG24130
KXG40303
KXG40306
OQU84501
OQU90921
OQU91064

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32040.1	KXG40306	AT1G62990.1	15781858
AT4G32040.1	EER91079	AT2G16400.1	15781858
AT4G32040.1	KXG24130	AT2G16400.1	15781858
AT4G32040.1	KXG20488	AT4G32040.1	15781858
AT4G32040.1	OQU84501	AT4G32040.1	15781858
AT4G32040.1	EES03882	AT5G02030.1	15781858
AT4G32040.1	EES18336	AT5G02030.1	15781858
AT4G32040.1	EER89055	AT5G41410.1	11701881
AT4G32040.1	EER92018	AT5G41410.1	11701881
AT4G32040.1	KXG40303	AT5G41410.1	11701881
AT4G32040.1	EER89055	AT5G41410.1	17873098
AT4G32040.1	EER92018	AT5G41410.1	17873098
AT4G32040.1	KXG40303	AT5G41410.1	17873098
AT5G11060.1	KXG40306	AT1G62990.1	15781858
AT5G11060.1	EER90950	AT4G08150.1	15781858
AT5G11060.1	EER91090	AT4G08150.1	15781858
AT5G11060.1	EER95833	AT4G08150.1	15781858
AT5G11060.1	OQU90921	AT4G08150.1	15781858
AT5G11060.1	OQU91064	AT4G08150.1	15781858
AT5G11060.1	EES04785	AT4G32980.1	15781858
AT5G11060.1	KXG20197	AT4G32980.1	15781858
AT5G11060.1	KXG20488	AT5G25220.1	15781858
AT5G11060.1	OQU84501	AT5G25220.1	15781858
AT5G11060.1	EER89055	AT5G41410.1	11701881
AT5G11060.1	EER92018	AT5G41410.1	11701881
AT5G11060.1	KXG40303	AT5G41410.1	11701881
AT5G25220.1	EER92063	AT1G79960.1	15781858
AT5G25220.1	EER96623	AT1G79960.1	15781858
AT5G25220.1	EES00995	AT1G79960.1	15781858
AT5G25220.1	EER91079	AT2G16400.1	15781858
AT5G25220.1	KXG24130	AT2G16400.1	15781858
AT5G25220.1	EES03882	AT5G02030.1	15781858
AT5G25220.1	EES18336	AT5G02030.1	15781858
AT5G25220.1	KXG20488	AT5G11060.1	15781858
AT5G25220.1	OQU84501	AT5G11060.1	15781858
AT5G25220.1	EER89055	AT5G41410.1	11701881
AT5G25220.1	EER92018	AT5G41410.1	11701881
AT5G25220.1	KXG40303	AT5G41410.1	11701881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G454600.1	Wheat	nucleus	53.29	96.59
Zm00001d046568_P001	Maize	nucleus	94.67	95.57
Os06t0646600-01	Rice	nucleus	92.16	91.02
TraesCS7D01G501000.1	Wheat	nucleus	86.21	89.0
OQU84501	Sorghum	nucleus	82.13	85.62
TraesCS1B01G135600.1	Wheat	nucleus	73.98	83.99
TraesCS7B01G423100.2	Wheat	nucleus	84.64	80.6
HORVU7Hr1G114650.2	Barley	nucleus	75.86	74.92
CDX88165	Canola	nucleus	66.14	70.57
TraesCS7A01G511800.2	Wheat	nucleus	86.52	69.0
Solyc08g041820.2.1	Tomato	nucleus	64.26	58.74
KRG98594	Soybean	extracellular	14.73	57.32
PGSC0003DMT400040351	Potato	nucleus	65.2	56.99
CDX78407	Canola	nucleus	66.77	55.18
Bra006085.1-P	Field mustard	nucleus	66.77	55.18
CDY05371	Canola	nucleus	69.59	54.95
KXG40306	Sorghum	nucleus	55.17	54.49
AT5G11060.1	Thale cress	nucleus	66.77	54.2
Bra028554.1-P	Field mustard	nucleus	65.52	54.01
CDY51104	Canola	nucleus	66.46	53.94
CDX85732	Canola	nucleus	66.46	53.94
KRH52385	Soybean	nucleus	67.08	53.77
KRH05245	Soybean	nucleus	68.97	53.53
CDY05480	Canola	nucleus	69.28	52.62
KRH61712	Soybean	nucleus	67.71	52.55
KRH15810	Soybean	nucleus	67.71	52.43
CDX68812	Canola	nucleus	60.81	51.87
AT5G25220.1	Thale cress	nucleus	69.91	51.74
CDX75215	Canola	nucleus	60.5	51.6
Bra011317.1-P	Field mustard	nucleus	60.19	51.34
AT4G32040.1	Thale cress	nucleus	61.44	51.17
CDY13472	Canola	nucleus	61.13	51.05
VIT_04s0008g06130.t01	Wine grape	nucleus	68.03	50.82
Bra023965.1-P	Field mustard	nucleus	60.81	50.65
Bra009826.1-P	Field mustard	nucleus	65.52	50.48
CDX72343	Canola	nucleus	61.44	49.0
CDX80491	Canola	nucleus	66.14	47.52
Bra020491.1-P	Field mustard	nucleus	58.31	47.33
CDX70374	Canola	nucleus	43.26	45.7
EES18954	Sorghum	nucleus	31.03	32.67
EES00633	Sorghum	nucleus	28.84	31.29
EER90950	Sorghum	nucleus	30.41	26.94
EER95833	Sorghum	nucleus	28.53	25.56
EER91090	Sorghum	nucleus	26.65	25.45
OQU90921	Sorghum	nucleus	26.96	24.64
OQU91064	Sorghum	nucleus	28.53	24.53

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	UniProt:A0A194YKK6	InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1
InterPro:KNOX2	EnsemblPlants:KXG20488	ProteinID:KXG20488	ProteinID:KXG20488.1	PFAM:PF03789	PFAM:PF03790
PFAM:PF03791	PFAM:PF05920	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF133
SMART:SM00389	SMART:SM01188	SMART:SM01255	SMART:SM01256	EnsemblPlantsGene:SORBI_3010G207500	SUPFAM:SSF46689
UniParc:UPI0001C804EA	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:55038648..55041924

Molecular Weight (calculated)

34607.6 Da

IEP (calculated)

6.134

GRAVY (calculated)

-0.560

Length

319 amino acids

Sequence
(BLAST)

001: MAFNYHDHAL AMDPAAVGAA AANPSFVSGG GGGGGVAGGG PGWEREKAAI AAHPLYERLL EAHVACLRVA TPVDQLPRID AQIAARPPPM AAAAAAAAAG
101: GAHSGGEELD LFMTHYVLLL CSFKEQLQQH VRVHAMEAVM ACWELEQTLQ SLTGASPGEG TGATMSDDED NQVDSESNMF DGNEGSDGMG FGPLMLTEGE
201: RSLVERVRQE LKHELKQGYR DKLVDIREEI LRKRRAGKLP GDTASTLKAW WQAHSKWPYP TEEDKARLVQ ETGLQLKQIN NWFINQRKRN WHNNPASSSS
301: DKSKRKRSTA GDGNAEQSW

Best Arabidopsis Sequence Match ( AT5G25220.1 )
(BLAST)

001: MAFHHNHLSQ DLSFNHFTDQ HQPPPPQPPP PPPQQQQHFQ EAPPPNWLNT ALLRSSDNNN NFLNLHTATA NTTTASSSDS PSSAAAAAAA NQWLSRSSSF
101: LQRNNNNNAS IVGDGIDDVT GGADTMIQGE MKTGGGENKN DGGGATAADG VVSWQNARHK AEILSHPLYE QLLSAHVACL RIATPVDQLP RIDAQLAQSQ
201: HVVAKYSALG AAAQGLVGDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGMGATMS DDEDEQVESD ANMFDGGLDV
301: LGFGPLIPTE SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK
401: RNWHSNPSSS TVLKNKRKSN AGDNSGRERF A

Arabidopsis Description

KNAT3KNAT3 [Source:UniProtKB/TrEMBL;Acc:A0A178U9D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.