CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85732	Canola	nucleus	98.73	98.73
Bra028554.1-P	Field mustard	nucleus	95.67	97.16
CDX78407	Canola	nucleus	91.09	92.75
CDX70374	Canola	nucleus	67.68	88.08
CDX88165	Canola	nucleus	64.63	84.95
TraesCS5B01G454600.1	Wheat	nucleus	37.15	82.95
CDY05371	Canola	nucleus	80.41	78.22
CDY05480	Canola	nucleus	81.68	76.43
TraesCS6D01G134800.1	Wheat	nucleus	39.69	75.36
TraesCS1B01G135600.1	Wheat	nucleus	48.09	67.26
Zm00001d046568_P001	Maize	nucleus	53.69	66.77
TraesCS7D01G501000.1	Wheat	nucleus	52.42	66.67
OQU84501	Sorghum	nucleus	51.91	66.67
KXG20488	Sorghum	nucleus	53.94	66.46
Os02t0182800-01	Rice	nucleus	52.67	66.13
TraesCS6B01G173900.1	Wheat	nucleus	50.13	66.11
TraesCS6A01G145500.1	Wheat	nucleus	51.4	66.01
Os06t0646600-01	Rice	nucleus	53.94	65.63
HORVU6Hr1G028610.2	Barley	nucleus	50.89	64.72
Zm00001d053749_P002	Maize	nucleus	51.4	63.32
Zm00001d015549_P001	Maize	nucleus	51.91	62.77
CDX93852	Canola	nucleus	35.37	62.61
CDX80491	Canola	nucleus	70.48	62.39
TraesCS7B01G423100.2	Wheat	nucleus	52.67	61.79
CDY66559	Canola	nucleus	45.29	60.54
CDY45968	Canola	nucleus	45.04	60.41
HORVU7Hr1G114650.2	Barley	nucleus	49.62	60.37
CDY64892	Canola	nucleus	45.04	60.2
CDX68812	Canola	nucleus	57.25	60.16
CDX75215	Canola	nucleus	57.25	60.16
CDY13472	Canola	nucleus	55.47	57.07
CDX72343	Canola	nucleus	54.71	53.75
TraesCS7A01G511800.2	Wheat	nucleus	52.42	51.5
CDY41449	Canola	nucleus	12.21	39.67
CDY34012	Canola	nucleus	14.76	30.05
CDX91713	Canola	nucleus	22.65	28.34
CDY03742	Canola	nucleus	22.14	26.61
CDY09448	Canola	nucleus	21.88	26.3
CDY69524	Canola	nucleus	12.98	25.0
CDY70923	Canola	nucleus	12.47	23.9
CDX83145	Canola	nucleus	23.16	22.64
CDY12943	Canola	nucleus	20.87	21.41
CDY19545	Canola	nucleus	20.87	21.41
CDY41448	Canola	nucleus	10.69	20.19
CDY04722	Canola	nucleus	10.94	19.46
CDY68624	Canola	nucleus	17.05	19.2
CDY44142	Canola	nucleus	11.2	18.72

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	GO:A0A078INZ3	UniProt:A0A078INZ3	EnsemblPlants:CDY51104	ProteinID:CDY51104
ProteinID:CDY51104.1	InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00098275001	InterPro:Homeobox-like_sf
InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2
PFAM:PF03789	PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	PFscan:PS50071	PFscan:PS51213
PANTHER:PTHR11850	PANTHER:PTHR11850:SF95	SMART:SM00389	SMART:SM01188	SMART:SM01255	SMART:SM01256
SUPFAM:SSF46689	UniParc:UPI0004EE3D88	SEG:seg	:	:	:

Description

BnaCnng20070DBnaCnng20070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078INZ3]

Coordinates

chrLK032967:+:22399..24917

Molecular Weight (calculated)

44236.4 Da

IEP (calculated)

6.292

GRAVY (calculated)

-0.810

Length

393 amino acids

Sequence
(BLAST)

001: MAFHNNHFNH FIDQQHQPPP PSQQQQEHHF HESTPPNWLL RSDNNFLNLQ TAASAAATSS DSPSSAAANQ WLSRSTSFLQ RGGGANNNNV GSGDVIDDFT
101: TGGEESMIGE GKEAERWQNA RHKSEILSHP LYERLLSAHV ACLRIATPVD QLPRIDAQLA QSQNVVAKYS TMDAAAQGLI SGDEKELDHF MTHYVLLLCS
201: FKEQLQQHVR VHAMEAVMAC WEIEQSLQSL TGVSPGEGTG ATMSEDEDEQ VESDAHLHDG SLDGLGFGPL VPTESERSLM ERVRQELKHE LKQGYKEKIV
301: DIREEILRKR RAGKLPGDTT SVLKAWWQSH SKWPYPTEED KVRLVQETGL ELKQINNWFI NQRKRNWHSN PSSSTVPKNK RRSNAGENSG RER

Best Arabidopsis Sequence Match ( AT5G11060.1 )
(BLAST)

001: MAFHNNHFNH FTDQQQHQPP PPPQQQQQQH FQESAPPNWL LRSDNNFLNL HTAASAAATS SDSPSSAAAN QWLSRSSSFL QRGNTANNNN NETSGDVIED
101: VPGGEESMIG EKKEAERWQN ARHKAEILSH PLYEQLLSAH VACLRIATPV DQLPRIDAQL AQSQNVVAKY STLEAAQGLL AGDDKELDHF MTHYVLLLCS
201: FKEQLQQHVR VHAMEAVMAC WEIEQSLQSF TGVSPGEGTG ATMSEDEDEQ VESDAHLFDG SLDGLGFGPL VPTESERSLM ERVRQELKHE LKQGYKEKIV
301: DIREEILRKR RAGKLPGDTT SVLKSWWQSH SKWPYPTEED KARLVQETGL QLKQINNWFI NQRKRNWHSN PSSSTVSKNK RRSNAGENSG RDR

Arabidopsis Description

KNAT4KNAT4 [Source:UniProtKB/TrEMBL;Acc:A0A178UC59]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.