CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024592.1-P	Field mustard	nucleus	82.21	80.66
CDY04722	Canola	nucleus	82.21	77.38
CDY44142	Canola	nucleus	82.69	73.19
CDX91713	Canola	nucleus	93.75	62.1
KRG99387	Soybean	nucleus	50.48	54.69
AT1G23380.2	Thale cress	nucleus	80.77	51.06
CDY09448	Canola	nucleus	66.35	42.2
CDY03742	Canola	nucleus	65.38	41.59
VIT_01s0127g00210.t01	Wine grape	nucleus	58.65	38.36
KRH74562	Soybean	nucleus	54.33	36.57
KRH45633	Soybean	nucleus	55.29	35.83
KRH69600	Soybean	nucleus	52.88	35.71
Solyc05g005090.2.1	Tomato	nucleus	45.67	29.69
PGSC0003DMT400035095	Potato	nucleus	47.12	28.49
CDY68624	Canola	nucleus	29.81	17.77
CDY12943	Canola	nucleus	28.37	15.4
CDY19545	Canola	nucleus	28.37	15.4
CDX83145	Canola	nucleus	29.33	15.17
CDX70374	Canola	nucleus	18.27	12.58
CDX88165	Canola	nucleus	17.79	12.37
CDY05371	Canola	nucleus	22.12	11.39
CDX78407	Canola	nucleus	20.67	11.14
CDY64892	Canola	nucleus	15.38	10.88
CDY66559	Canola	nucleus	15.38	10.88
CDY05480	Canola	nucleus	21.63	10.71
CDY51104	Canola	nucleus	20.19	10.69
CDX85732	Canola	nucleus	19.71	10.43
CDY69524	Canola	nucleus	10.1	10.29
CDY45968	Canola	nucleus	14.42	10.24
CDY34012	Canola	nucleus	9.13	9.84
CDX68812	Canola	nucleus	17.31	9.63
CDX75215	Canola	nucleus	16.83	9.36
CDY70923	Canola	nucleus	9.13	9.27
CDY13472	Canola	nucleus	16.35	8.9
CDX72343	Canola	nucleus	16.35	8.5
CDX80491	Canola	nucleus	17.79	8.33
CDX93852	Canola	nucleus	5.29	4.95
CDY41449	Canola	nucleus	1.92	3.31
KRG99390	Soybean	nucleus	0.96	1.53

Protein Annotations

MapMan:15.5.3.4	GO:A0A078HXG8	UniProt:A0A078HXG8	EnsemblPlants:CDY41448	ProteinID:CDY41448	ProteinID:CDY41448.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSBRNA2T00073049001	InterPro:KNOX1	InterPro:KNOX2	PFAM:PF03790
PFAM:PF03791	PANTHER:PTHR11850	PANTHER:PTHR11850:SF99	SMART:SM01255	SMART:SM01256	UniParc:UPI0004EE7B64
SEG:seg	:	:	:	:	:

Description

BnaA08g20500DBnaA08g20500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXG8]

Coordinates

chrLK032498:+:69826..71574

Molecular Weight (calculated)

22922.3 Da

IEP (calculated)

4.326

GRAVY (calculated)

-0.113

Length

208 amino acids

Sequence
(BLAST)

001: MDGMYGFHPT CDYSDKPVMM MSQDNLMFPS DYQTLLCSSA GDNRVSDVFG SNELLSVAAS AMSSEAASMG PEIRTNNGNV SLGVVKAKIA CHPSYPRLLQ
101: AYMDCQKVGA PPEIAYLLEE IQRESHVYKQ GVAPSSSCFG ADPELDEFME TYCEILVKYK SDLARPFDEA TTFLNKIEMQ LRNLCTGVES ARGLSEILIL
201: TFQSLVAY

Best Arabidopsis Sequence Match ( AT1G23380.1 )
(BLAST)

001: MDGMYNFHSA GDYSDKSVLM MSPESLMFPS DYQALLCSSA GENRVSDVFG SDELLSVAVS ALSSEAASIA PEIRRNDDNV SLTVIKAKIA CHPSYPRLLQ
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE

Arabidopsis Description

KNAT6KNOTTED1-like homeobox gene 6 [Source:TAIR;Acc:AT1G23380]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.