Factsheet for VIT_01s0127g00210.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41449	Canola	nucleus	27.04	71.07
KRG99390	Soybean	nucleus	29.25	70.99
KRH45633	Soybean	nucleus	71.07	70.41
KRH74562	Soybean	nucleus	68.24	70.23
KRH69600	Soybean	nucleus	67.3	69.48
AT1G23380.2	Thale cress	nucleus	70.13	67.78
Bra024591.1-P	Field mustard	nucleus	69.81	67.68
VIT_17s0000g08710.t01	Wine grape	nucleus	66.67	66.46
KRG99387	Soybean	nucleus	39.62	65.62
Bra016348.1-P	Field mustard	nucleus	64.78	65.61
CDX91713	Canola	nucleus	64.47	65.29
CDY03742	Canola	nucleus	65.72	63.91
Bra007920.1-P	Field mustard	nucleus	65.41	63.61
AT1G70510.2	Thale cress	nucleus	62.58	63.38
CDY09448	Canola	nucleus	65.09	63.3
Solyc05g005090.2.1	Tomato	nucleus	61.32	60.94
Bra024592.1-P	Field mustard	nucleus	40.57	60.85
Bra024593.1-P	Field mustard	nucleus	39.94	60.77
CDY41448	Canola	nucleus	38.36	58.65
CDY04722	Canola	nucleus	40.57	58.37
PGSC0003DMT400035095	Potato	nucleus	62.89	58.14
CDY69524	Canola	nucleus	36.16	56.37
CDY44142	Canola	nucleus	41.51	56.17
CDY70923	Canola	nucleus	35.53	55.12
VIT_15s0021g01750.t01	Wine grape	nucleus	36.79	51.09
VIT_14s0060g01180.t01	Wine grape	nucleus	48.43	49.68
VIT_18s0001g08380.t01	Wine grape	nucleus	49.37	42.43
VIT_12s0059g01190.t01	Wine grape	nucleus	43.4	38.23
VIT_10s0116g00190.t01	Wine grape	nucleus	41.51	37.71
VIT_02s0025g04630.t01	Wine grape	nucleus	26.1	28.52
VIT_11s0118g00800.t01	Wine grape	nucleus	27.99	20.7
VIT_04s0008g06130.t01	Wine grape	nucleus	27.04	20.14

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100246480	wikigene:100246480	MapMan:15.5.3.4	ProteinID:CBI28570	ProteinID:CBI28570.3
UniProt:D7TDJ7	InterPro:ELK_dom	EMBL:FN595761	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2	EntrezGene:LOC100246480	wikigene:LOC100246480
PFAM:PF03789	PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	ScanProsite:PS00027	PFscan:PS50071
PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF99	SMART:SM00389	SMART:SM01188	SMART:SM01255
SMART:SM01256	SUPFAM:SSF46689	TIGR:TC56940	UniParc:UPI00015CCCD8	ArrayExpress:VIT_01s0127g00210	EnsemblPlantsGene:VIT_01s0127g00210
EnsemblPlants:VIT_01s0127g00210.t01	unigene:Vvi.11375	RefSeq:XP_002263313	RefSeq:XP_002263313.1	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:7552407..7562349

Molecular Weight (calculated)

36296.6 Da

IEP (calculated)

4.542

GRAVY (calculated)

-0.597

Length

318 amino acids

Sequence
(BLAST)

001: MEEVYGLNST SDYSDKVLMS PENLILPADY QSFFSSAAAF RDYRIPVFGS NELISVASAI SETASITPEI QREEDVSSVI KAKIASHPCY PRLLEAYIDC
101: QKVGAPPEIA CLLDEIRREN DVCKRDAVST CLGADPELDE FMETYCDMLE KYKSDLARPF DEATTFLNKI EMQLGNLCND ASIRSLPDEA VVSSDEDFSG
201: GEEVQEAQPR GEDQELKERL LRRFGGRISS LKLEFSKKKK KGKLPKEARQ TLLEWWNLHY KWPYPTEADK IALAETTGLD QKQINNWFIN QRKRHWKPSE
301: NMQFAVMDNH SGQFFTDD

Best Arabidopsis Sequence Match ( AT1G23380.1 )
(BLAST)

001: MDGMYNFHSA GDYSDKSVLM MSPESLMFPS DYQALLCSSA GENRVSDVFG SDELLSVAVS ALSSEAASIA PEIRRNDDNV SLTVIKAKIA CHPSYPRLLQ
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE

Arabidopsis Description

KNAT6KNOTTED1-like homeobox gene 6 [Source:TAIR;Acc:AT1G23380]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.