Factsheet for VIT_12s0059g01190.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0116g00190.t01	Wine grape	nucleus	69.25	71.43
VIT_17s0000g08710.t01	Wine grape	nucleus	39.06	44.2
VIT_18s0001g08380.t01	Wine grape	nucleus	45.15	44.05
VIT_01s0127g00210.t01	Wine grape	nucleus	38.23	43.4
VIT_14s0060g01180.t01	Wine grape	nucleus	36.01	41.94
VIT_15s0021g01750.t01	Wine grape	nucleus	17.73	27.95
VIT_02s0025g04630.t01	Wine grape	nucleus	21.05	26.12
VIT_04s0008g06130.t01	Wine grape	nucleus	24.38	20.61
VIT_11s0118g00800.t01	Wine grape	nucleus	23.82	20.0

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100248152	wikigene:100248152	MapMan:15.5.3.4	EMBL:AM483920	ProteinID:CAN64264
ProteinID:CAN64264.1	ProteinID:CCB51986	ProteinID:CCB51986.1	InterPro:ELK_dom	UniProt:F6HIE0	EMBL:FN595765
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_KN_domain
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2	EntrezGene:LOC100248152
wikigene:LOC100248152	PFAM:PF03789	PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	ScanProsite:PS00027
PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF100	SMART:SM00389	SMART:SM01188
SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689	UniParc:UPI0002108DC0	ArrayExpress:VIT_12s0059g01190	EnsemblPlantsGene:VIT_12s0059g01190
EnsemblPlants:VIT_12s0059g01190.t01	RefSeq:XP_002273805	RefSeq:XP_002273805.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:-:6115558..6119370

Molecular Weight (calculated)

40103.5 Da

IEP (calculated)

6.499

GRAVY (calculated)

-0.598

Length

361 amino acids

Sequence
(BLAST)

001: MEVGGGGGGG GPSTTSCMMG FGNNSNGLSS MVMMMPLMSS SNAETSKVFL PLPFWNNNNS SNNPNQQSSQ KVSALMPQGS CNHNNSGCYF MEGSNSNTTN
101: NHDCTSCSMK AKIMAHPHYP RLLAAYVNCQ KVGAPPEVVA RLEEACASEE AMGRSATSCV GEDPALDQFM EAYCEMLTKY EQELTKPFKE AMLFLSRIEC
201: QFKALTVAPS DSVCGSYAGR VGSSEEEVDG NDTCIDPQAE DRELKGQLLR KYSGYLGSLK QEFLKKKKKG KLPKEARQQL LDWWSRHYKW PYPSESQKLA
301: LAESTGLDQK QINNWFINQR KRHWKPSEDM QFVVMDATHP HYYMDSVMGN PFPMDCTPTL L

Best Arabidopsis Sequence Match ( AT1G62360.1 )
(BLAST)

001: MESGSNSTSC PMAFAGDNSD GPMCPMMMMM PPIMTSHQHH GHDHQHQQQE HDGYAYQSHH QQSSSLFLQS LAPPQGTKNK VASSSSPSSC APAYSLMEIH
101: HNEIVAGGIN PCSSSSSSAS VKAKIMAHPH YHRLLAAYVN CQKVGAPPEV VARLEEACSS AAAAAASMGP TGCLGEDPGL DQFMEAYCEM LVKYEQELSK
201: PFKEAMVFLQ RVECQFKSLS LSSPSSFSGY GETAIDRNNN GSSEEEVDMN NEFVDPQAED RELKGQLLRK YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL
301: DWWSRHYKWP YPSEQQKLAL AESTGLDQKQ INNWFINQRK RHWKPSEDMQ FVVMDATHPH HYFMDNVLGN PFPMDHISST ML

Arabidopsis Description

STMHomeobox protein SHOOT MERISTEMLESS [Source:UniProtKB/Swiss-Prot;Acc:Q38874]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.