Factsheet for VIT_17s0000g08710.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0021g01750.t01	Wine grape	nucleus	59.56	82.97
VIT_01s0127g00210.t01	Wine grape	nucleus	66.46	66.67
PGSC0003DMT400087440	Potato	nucleus	23.51	59.52
KRH63561	Soybean	nucleus	48.9	56.12
VIT_14s0060g01180.t01	Wine grape	nucleus	50.16	51.61
VIT_18s0001g08380.t01	Wine grape	nucleus	48.9	42.16
VIT_10s0116g00190.t01	Wine grape	nucleus	43.26	39.43
VIT_12s0059g01190.t01	Wine grape	nucleus	44.2	39.06
Solyc03g112740.1.1	Tomato	nucleus	20.38	35.33
PGSC0003DMT400046618	Potato	nucleus	17.87	34.34
VIT_02s0025g04630.t01	Wine grape	nucleus	25.39	27.84
VIT_11s0118g00800.t01	Wine grape	nucleus	29.47	21.86
VIT_04s0008g06130.t01	Wine grape	nucleus	29.15	21.78

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100243290	wikigene:100243290	MapMan:15.5.3.4	ProteinID:CBI15003	ProteinID:CBI15003.3
UniProt:D7SHP3	InterPro:ELK_dom	EMBL:FN594950	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539
InterPro:KNOX1	InterPro:KNOX2	EntrezGene:LOC100243290	wikigene:LOC100243290	PFAM:PF03789	PFAM:PF03790
PFAM:PF03791	PFAM:PF05920	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850
PANTHER:PTHR11850:SF202	SMART:SM00389	SMART:SM01188	SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689
UniParc:UPI00015C8D23	ArrayExpress:VIT_17s0000g08710	EnsemblPlantsGene:VIT_17s0000g08710	EnsemblPlants:VIT_17s0000g08710.t01	unigene:Vvi.14039	RefSeq:XP_002282076
RefSeq:XP_002282076.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr17:+:9989635..10000224

Molecular Weight (calculated)

35893.1 Da

IEP (calculated)

4.922

GRAVY (calculated)

-0.547

Length

319 amino acids

Sequence
(BLAST)

001: MDQLYGLHSP SSSDYHHPPP FPPENLISPS HYPNFNSPAP FPIFGSDQLL SASSLVVSDA ASMVAEIQGG GSGEEVSSAI RAKIATHPLY PKLLHAYIEC
101: QKVGAPPEVA YLLEEIRRGS ELCRRNAVST CLGADPELDE FMETYCDILV KYKSDLARPF DEATAFLNNI ETQLNTLCNG ASRSYVSDEA AGSSEEDLSG
201: GEVEVQECLQ TTENQELKDK LLRKYSGYIS TLKHEFSKTK KKGKLPKEAR QALLDWWNIH YKWPYPTEED KIALAESTGL DQKQINNWFI NQRKRHWKPS
301: ENMQFAVMDS IYGPFFMNE

Best Arabidopsis Sequence Match ( AT1G23380.1 )
(BLAST)

001: MDGMYNFHSA GDYSDKSVLM MSPESLMFPS DYQALLCSSA GENRVSDVFG SDELLSVAVS ALSSEAASIA PEIRRNDDNV SLTVIKAKIA CHPSYPRLLQ
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE

Arabidopsis Description

KNAT6KNOTTED1-like homeobox gene 6 [Source:TAIR;Acc:AT1G23380]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.