Factsheet for PGSC0003DMT400087440

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g08710.t01	Wine grape	nucleus	59.52	23.51
KRH63561	Soybean	nucleus	51.59	23.38
PGSC0003DMT400007159	Potato	nucleus	53.97	21.12
PGSC0003DMT400035095	Potato	nucleus	53.97	19.77
PGSC0003DMT400043083	Potato	nucleus	50.79	18.66
PGSC0003DMT400012712	Potato	nucleus	53.17	18.61
PGSC0003DMT400058528	Potato	nucleus	34.13	13.78
PGSC0003DMT400020407	Potato	nucleus	34.92	12.94
PGSC0003DMT400040351	Potato	nucleus	34.13	11.78
PGSC0003DMT400078990	Potato	nucleus	35.71	10.84
Solyc03g112740.1.1	Tomato	nucleus	4.76	3.26
PGSC0003DMT400046618	Potato	nucleus	1.59	1.2

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	ncoils:Coil	InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:IPR005539	UniProt:M1DDU8	PFAM:PF03789	PFAM:PF05920	EnsemblPlantsGene:PGSC0003DMG400037011	PGSC:PGSC0003DMG400037011
EnsemblPlants:PGSC0003DMT400087440	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF102
SMART:SM00389	SMART:SM01188	SUPFAM:SSF46689	UniParc:UPI00029581CB	SEG:seg	:

Description

Homeobox 9 [Source:PGSC_GENE;Acc:PGSC0003DMG400037011]

Coordinates

chr3:-:52497981..52498441

Molecular Weight (calculated)

14760.5 Da

IEP (calculated)

9.364

GRAVY (calculated)

-1.055

Length

126 amino acids

Sequence
(BLAST)

001: MGGGGGVNNE QQNDELCRSG SEMKDKLMEK YSGYITSLKH DFCKKNYNKG KLPKEATQIL LNWWTTHYNW PYPTDGEKVS LAESTGLDPK QINNWFINQR
101: KRHWKLPSQN MQFPLMETIY GRHFSQ

Best Arabidopsis Sequence Match ( AT1G23380.1 )
(BLAST)

001: MDGMYNFHSA GDYSDKSVLM MSPESLMFPS DYQALLCSSA GENRVSDVFG SDELLSVAVS ALSSEAASIA PEIRRNDDNV SLTVIKAKIA CHPSYPRLLQ
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE

Arabidopsis Description

KNAT6KNOTTED1-like homeobox gene 6 [Source:TAIR;Acc:AT1G23380]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.