Factsheet for PGSC0003DMT400040351

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400012712
PGSC0003DMT400014515
PGSC0003DMT400032122
PGSC0003DMT400040351
PGSC0003DMT400049235
PGSC0003DMT400058528
PGSC0003DMT400062353
PGSC0003DMT400076995

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11060.1	PGSC0003DMT400058528	AT1G62990.1	15781858
AT5G11060.1	PGSC0003DMT400012712	AT4G08150.1	15781858
AT5G11060.1	PGSC0003DMT400076995	AT4G32980.1	15781858
AT5G11060.1	PGSC0003DMT400040351	AT5G25220.1	15781858
AT5G11060.1	PGSC0003DMT400032122	AT5G41410.1	11701881
AT5G25220.1	PGSC0003DMT400014515	AT1G79960.1	15781858
AT5G25220.1	PGSC0003DMT400049235	AT5G02030.1	15781858
AT5G25220.1	PGSC0003DMT400062353	AT5G02030.1	15781858
AT5G25220.1	PGSC0003DMT400040351	AT5G11060.1	15781858
AT5G25220.1	PGSC0003DMT400032122	AT5G41410.1	11701881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g041820.2.1	Tomato	nucleus	92.05	96.28
TraesCS5B01G454600.1	Wheat	nucleus	41.37	85.8
CDX88165	Canola	nucleus	66.3	80.94
TraesCS6D01G134800.1	Wheat	nucleus	44.93	79.23
TraesCS6B01G173900.1	Wheat	nucleus	55.34	67.79
OQU84501	Sorghum	nucleus	56.71	67.65
TraesCS1B01G135600.1	Wheat	nucleus	52.05	67.62
TraesCS6A01G145500.1	Wheat	nucleus	55.62	66.34
TraesCS7D01G501000.1	Wheat	nucleus	55.89	66.02
Zm00001d046568_P001	Maize	nucleus	56.71	65.51
KXG20488	Sorghum	nucleus	56.99	65.2
Os02t0182800-01	Rice	nucleus	55.89	65.18
HORVU6Hr1G028610.2	Barley	nucleus	55.07	65.05
Os06t0646600-01	Rice	nucleus	57.53	65.02
Zm00001d053749_P002	Maize	nucleus	56.71	64.89
KRH52385	Soybean	nucleus	70.41	64.57
CDX78407	Canola	nucleus	68.22	64.51
Bra006085.1-P	Field mustard	nucleus	68.22	64.51
KRH61712	Soybean	nucleus	72.05	63.99
AT5G11060.1	Thale cress	nucleus	68.77	63.87
Zm00001d015549_P001	Maize	nucleus	56.44	63.38
CDY05371	Canola	nucleus	69.86	63.12
PGSC0003DMT400058528	Potato	nucleus	52.6	61.54
KRH05245	Soybean	nucleus	69.04	61.31
HORVU7Hr1G114650.2	Barley	nucleus	54.25	61.3
CDY05480	Canola	nucleus	70.41	61.19
KRH15810	Soybean	nucleus	68.77	60.92
PGSC0003DMT400020407	Potato	nucleus	56.71	60.88
AT5G25220.1	Thale cress	nucleus	71.78	60.79
TraesCS7B01G423100.2	Wheat	nucleus	55.62	60.6
PGSC0003DMT400078990	Potato	nucleus	68.77	60.48
Bra009826.1-P	Field mustard	nucleus	67.95	59.9
CDX80491	Canola	nucleus	66.85	54.95
TraesCS7A01G511800.2	Wheat	nucleus	55.62	50.75
PGSC0003DMT400087440	Potato	nucleus	11.78	34.13
PGSC0003DMT400007159	Potato	nucleus	24.93	28.26
PGSC0003DMT400012712	Potato	nucleus	25.75	26.11
PGSC0003DMT400043083	Potato	nucleus	24.11	25.66
PGSC0003DMT400035095	Potato	nucleus	23.29	24.71
PGSC0003DMT400046618	Potato	nucleus	8.22	18.07

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102606182	MapMan:15.5.3.4	InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1
InterPro:KNOX2	UniProt:M1B9S3	PFAM:PF03789	PFAM:PF03790	PFAM:PF03791	PFAM:PF05920
EnsemblPlantsGene:PGSC0003DMG400015622	PGSC:PGSC0003DMG400015622	EnsemblPlants:PGSC0003DMT400040351	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850
PANTHER:PTHR11850:SF95	SMART:SM00389	SMART:SM01188	SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689
UniParc:UPI000294B7CE	:	:	:	:	:

Description

Class II knotted-like homeobox protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015622]

Coordinates

chr8:-:21128554..21133459

Molecular Weight (calculated)

41359.5 Da

IEP (calculated)

5.442

GRAVY (calculated)

-0.720

Length

365 amino acids

Sequence
(BLAST)

001: MDMPDENSPI LRTSLPEQSS SDVKPLEHQQ PPTWLNREIL LPQSQYTVAG AGENLQSNSN QWLSRSILQR NISDVQASND SDLNKDEFGQ SEVVNWQNAG
101: YKAEILAHPL FEQLLSAHVA CLRIATPVDQ LPRIDAQLAQ SQQVAGKYSG LGHGNLADDK ELDQFLTHYV LLLCSFKEQL QQHVRVHAME AVMACWEIEQ
201: SLQSLTGVSP GEGTGATMSD DEDEQVDSDA NLFEGSLDGH DSMGFGPLIP TESERSLMER VRQELKHELK QGYKEKLVDI REEILRKRRA GKLPGDTTSV
301: LKAWWQSHSK WPYPTEEDKA KLVQETGLQL KQINNWFINQ RKRNWHSNPS SSTALKSKRK RYYVS

Best Arabidopsis Sequence Match ( AT5G25220.2 )
(BLAST)

001: MAFHHNHLSQ DLSFNHFTDQ HQPPPPQPPP PPPQQQQHFQ EAPPPNWLNT ALLRSSDNNN NFLNLHTATA NTTTASSSDS PSSAAAAAAA NQWLSRSSSF
101: LQRNNNNNAS IVGDGIDDVT GGADTMIQGE MKTGGGENKN DGGGATAADG VVSWQNARHK AEILSHPLYE QLLSAHVACL RIATPVDQLP RIDAQLAQSQ
201: HVVAKYSALG AAAQGLVGDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGMGATMS DDEDEQVESD ANMFDGGLDV
301: LGFGPLIPTE SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK
401: RNWHSNPSSS TVLKNKRKR

Arabidopsis Description

KNAT3KNAT3 [Source:UniProtKB/TrEMBL;Acc:A0A178U9D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.