CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71279
CDX78407
CDX80798
CDX84837
CDX87287
CDX97830
CDY02063
CDY04827
CDY06241
CDY09945
CDY10473
CDY10735
CDY29674
CDY37564
CDY40327
CDY41111
CDY44476
CDY45383
CDY46209
CDY48107
CDY55113
CDY58777
CDY62219
CDY67505
CDY69132

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25220.1	CDY06241	AT1G06920.1	15781858
AT5G25220.1	CDY09945	AT1G06920.1	15781858
AT5G25220.1	CDY67505	AT1G06920.1	15781858
AT5G25220.1	CDX87287	AT1G79960.1	15781858
AT5G25220.1	CDY37564	AT1G79960.1	15781858
AT5G25220.1	CDY41111	AT1G79960.1	15781858
AT5G25220.1	CDY58777	AT1G79960.1	15781858
AT5G25220.1	CDX71279	AT2G16400.1	15781858
AT5G25220.1	CDY46209	AT2G16400.1	15781858
AT5G25220.1	CDX84837	AT2G30400.1	15781858
AT5G25220.1	CDX97830	AT2G30400.1	15781858
AT5G25220.1	CDY02063	AT2G30400.1	15781858
AT5G25220.1	CDY10735	AT2G30400.1	15781858
AT5G25220.1	CDY29674	AT2G30400.1	15781858
AT5G25220.1	CDY62219	AT2G30400.1	15781858
AT5G25220.1	CDY04827	AT5G01840.1	15781858
AT5G25220.1	CDX80798	AT5G02030.1	15781858
AT5G25220.1	CDY10473	AT5G02030.1	15781858
AT5G25220.1	CDY40327	AT5G02030.1	15781858
AT5G25220.1	CDY48107	AT5G02030.1	15781858
AT5G25220.1	CDY55113	AT5G02030.1	15781858
AT5G25220.1	CDY69132	AT5G02030.1	15781858
AT5G25220.1	CDX78407	AT5G11060.1	15781858
AT5G25220.1	CDY44476	AT5G41410.1	11701881
AT5G25220.1	CDY45383	AT5G41410.1	11701881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G454600.1	Wheat	nucleus	50.17	85.23
TraesCS6D01G134800.1	Wheat	nucleus	53.85	77.78
CDY05371	Canola	nucleus	93.65	69.31
Solyc08g041820.2.1	Tomato	nucleus	79.93	68.48
Bra009826.1-P	Field mustard	nucleus	94.31	68.12
TraesCS6B01G173900.1	Wheat	nucleus	67.56	67.79
OQU84501	Sorghum	nucleus	69.23	67.65
CDY05480	Canola	nucleus	94.65	67.38
TraesCS7D01G501000.1	Wheat	nucleus	69.57	67.31
TraesCS1B01G135600.1	Wheat	nucleus	62.88	66.9
AT5G25220.1	Thale cress	nucleus	96.32	66.82
TraesCS6A01G145500.1	Wheat	nucleus	67.89	66.34
PGSC0003DMT400040351	Potato	nucleus	80.94	66.3
KXG20488	Sorghum	nucleus	70.57	66.14
Zm00001d046568_P001	Maize	nucleus	69.9	66.14
Os02t0182800-01	Rice	nucleus	69.23	66.13
CDX78407	Canola	nucleus	85.28	66.06
Os06t0646600-01	Rice	nucleus	71.24	65.94
CDX80491	Canola	nucleus	97.66	65.77
CDX85732	Canola	nucleus	85.62	65.14
HORVU6Hr1G028610.2	Barley	nucleus	67.22	65.05
CDY51104	Canola	nucleus	84.95	64.63
CDX93852	Canola	nucleus	47.83	64.41
Zm00001d053749_P002	Maize	nucleus	68.56	64.26
Zm00001d015549_P001	Maize	nucleus	68.9	63.38
CDY66559	Canola	nucleus	61.2	62.24
CDY64892	Canola	nucleus	60.87	61.9
CDY45968	Canola	nucleus	60.54	61.77
HORVU7Hr1G114650.2	Barley	nucleus	66.56	61.61
TraesCS7B01G423100.2	Wheat	nucleus	68.56	61.19
CDX70374	Canola	nucleus	55.85	55.3
CDX68812	Canola	nucleus	68.9	55.08
CDX75215	Canola	nucleus	68.56	54.81
CDY13472	Canola	nucleus	68.23	53.4
TraesCS7A01G511800.2	Wheat	nucleus	68.9	51.5
CDX72343	Canola	nucleus	68.56	51.25
CDY41449	Canola	nucleus	16.05	39.67
CDY34012	Canola	nucleus	19.06	29.53
CDX91713	Canola	nucleus	28.09	26.75
CDY03742	Canola	nucleus	27.76	25.38
CDY09448	Canola	nucleus	27.42	25.08
CDY69524	Canola	nucleus	17.06	25.0
CDY70923	Canola	nucleus	16.39	23.9
CDX83145	Canola	nucleus	28.76	21.39
CDY12943	Canola	nucleus	26.42	20.63
CDY19545	Canola	nucleus	26.42	20.63
CDY41448	Canola	nucleus	12.37	17.79
CDY04722	Canola	nucleus	13.04	17.65
CDY68624	Canola	nucleus	20.4	17.48
CDY44142	Canola	nucleus	13.38	17.02

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	GO:A0A078DG51	EnsemblPlants:CDX88165	ProteinID:CDX88165	ProteinID:CDX88165.1
InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00147620001	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2	PFAM:PF03789
PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850
PANTHER:PTHR11850:SF95	SMART:SM00389	SMART:SM01188	SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689
UniParc:UPI0004EEB9D8	SEG:seg	:	:	:	:

Description

BnaA06g27560D

Coordinates

chrLK031854:+:1073972..1075772

Molecular Weight (calculated)

33432.5 Da

IEP (calculated)

6.516

GRAVY (calculated)

-0.669

Length

299 amino acids

Sequence
(BLAST)

001: MLSGGENKND GGGGGGEGVV SWQNARHKAE ILSHPLYEQL LSAHVACLRI ATPVDQLPRI DAQLAQSQHV VAKYSTLGGG GQGLVGDDKE LDQFMTHYVL
101: LLCSFKEQLQ QHVRVHAMEA VMACWEIEQS LQSLTGVSPG EGMGATMSDD EDEQVESDAN MFDGGLDVLG FGPLIPTESE RSLMERVRQE LKHELKQGYK
201: EKIVDIREEI LRKRRAGKLP GDTTSVLKAW WQSHSKWPYP TEEDKARLVQ ETGLQLKQIN NWFINQRKRN WHSNPSSSTV LKNKRKSNAG DNSGRERFT

Best Arabidopsis Sequence Match ( AT5G25220.1 )
(BLAST)

001: MAFHHNHLSQ DLSFNHFTDQ HQPPPPQPPP PPPQQQQHFQ EAPPPNWLNT ALLRSSDNNN NFLNLHTATA NTTTASSSDS PSSAAAAAAA NQWLSRSSSF
101: LQRNNNNNAS IVGDGIDDVT GGADTMIQGE MKTGGGENKN DGGGATAADG VVSWQNARHK AEILSHPLYE QLLSAHVACL RIATPVDQLP RIDAQLAQSQ
201: HVVAKYSALG AAAQGLVGDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGMGATMS DDEDEQVESD ANMFDGGLDV
301: LGFGPLIPTE SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK
401: RNWHSNPSSS TVLKNKRKSN AGDNSGRERF A

Arabidopsis Description

KNAT3KNAT3 [Source:UniProtKB/TrEMBL;Acc:A0A178U9D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.