CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68812
CDX72343
CDX75215
CDX78407
CDX80491
CDX83145
CDX88165
CDX93852
CDY13472
CDY34012
CDY45968
CDY64892
CDY66559
CDY68624

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30400.1	CDX93852	AT1G62990.1	15781858
AT2G30400.1	CDY45968	AT1G62990.1	15781858
AT2G30400.1	CDY64892	AT1G62990.1	15781858
AT2G30400.1	CDY66559	AT1G62990.1	15781858
AT2G30400.1	CDX83145	AT4G08150.1	15781858
AT2G30400.1	CDY34012	AT4G08150.1	15781858
AT2G30400.1	CDY68624	AT4G08150.1	15781858
AT2G30400.1	CDX68812	AT4G32040.1	15781858
AT2G30400.1	CDX72343	AT4G32040.1	15781858
AT2G30400.1	CDX75215	AT4G32040.1	15781858
AT2G30400.1	CDY13472	AT4G32040.1	15781858
AT2G30400.1	CDX78407	AT5G11060.1	15781858
AT2G30400.1	CDX80491	AT5G25220.1	15781858
AT2G30400.1	CDX88165	AT5G25220.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10735	Canola	nucleus	92.28	92.88
Bra018316.1-P	Field mustard	nucleus	92.6	91.14
CDX84837	Canola	nucleus	60.45	78.33
CDY62219	Canola	nucleus	75.24	75.73
CDX97830	Canola	nucleus	76.85	75.39
AT2G30400.1	Thale cress	nucleus	74.92	72.81
CDY29674	Canola	nucleus	75.56	72.53
CDY32706	Canola	cytosol	9.65	60.0
CDY02814	Canola	cytosol	9.0	56.0
CDY06241	Canola	mitochondrion	52.73	54.49
CDY09945	Canola	nucleus, plastid	52.09	53.82
CDY67505	Canola	nucleus, plastid	51.77	53.49
CDY04827	Canola	nucleus	27.01	32.68
CDY43860	Canola	nucleus	28.62	30.69
CDY32990	Canola	nucleus	27.97	30.42
GSMUA_Achr3P09850_001	Banana	mitochondrion	27.33	26.81
CDY44933	Canola	mitochondrion	15.76	23.79
CDY42284	Canola	mitochondrion	15.43	23.19
CDX92512	Canola	mitochondrion	15.43	22.43
CDY58970	Canola	mitochondrion	15.43	22.43
CDX75076	Canola	nucleus	13.18	22.04
CDY43753	Canola	nucleus	12.54	20.97
CDY09258	Canola	mitochondrion	20.9	20.31
CDY32705	Canola	mitochondrion	12.22	18.81
CDX78899	Canola	mitochondrion	19.61	18.71
CDX99420	Canola	mitochondrion	19.29	18.35
CDY01560	Canola	nucleus	20.58	17.98
CDY59540	Canola	plastid	14.47	15.57
CDY29238	Canola	nucleus, plastid	14.79	15.18
CDY02815	Canola	plastid	9.65	15.15
CDY36485	Canola	nucleus	15.11	15.06
CDY43893	Canola	nucleus	14.79	14.6
CDY72229	Canola	nucleus	14.47	14.33
CDY62560	Canola	nucleus	17.68	11.65

Protein Annotations

MapMan:15.5.37	GO:A0A078ERC0	EnsemblPlants:CDY02063	ProteinID:CDY02063	ProteinID:CDY02063.1	InterPro:DNA_bnd_dom_ovate
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892	EnsemblPlantsGene:GSBRNA2T00113426001	InterPro:IPR006458
InterPro:Ovate	InterPro:Ovate_C	PFAM:PF04844	PFAM:PF13724	PFscan:PS51754	PANTHER:PTHR33057
PANTHER:PTHR33057:SF38	TIGRFAMs:TIGR01568	UniParc:UPI0004EEA993	SEG:seg	:	:

Description

BnaC04g14380D

Coordinates

chrLK031931:+:1046996..1047931

Molecular Weight (calculated)

35901.3 Da

IEP (calculated)

10.327

GRAVY (calculated)

-1.068

Length

311 amino acids

Sequence
(BLAST)

001: MGNHKFKFSD MIPNAWFHKL KDMTNQSKPK NKPSYSSSNT CNKKKLSSDS FPHNSSASHF SNSLVANSPH HNLPRNSTHR KRMSKRKTFY KPSLKPNTPP
101: FASAGFDKSK INGQDSSHYT FPALERSPKY FVYSFYKEEE DEFVDHSNFK IKANNKAFTE KACPARNSTK KPLKPHLSVK INKEKEEDED DECITEKKYQ
201: KQVSSGRKSS SGINLRRVNS PRIQLSGTRR STSRSENKQA VLESFAVMKS SVDPKKDFRE SMVEMIEDNN IRASKDLEDL LACYLSLNPK EYHDLIIQVF
301: EQIWRQLTKT K

Best Arabidopsis Sequence Match ( AT2G30400.1 )
(BLAST)

001: MGNYKFRISE MLPNAWFHKL KDVTKHSKPK NKASSSSSNT CSKKKPSSDS LPQHSYFSNS LVANNPPHHN SPRNSLHTKK MSKRKTLYKP SLKPLTPPPL
101: LVSASFNKSK INDQDSSYSL FPAIETSPES FVYSFYEEDD DDEFVEFSNF KINTKNKAFT KQKVKVIDSV EKACTASKPI KKPQKSHLSV KISRDEDDNE
201: YKAEKKYQRQ VSSGRKPSAG INLKRVNSPR IQLSGTRRST SRRSESKQDV LESFAVMKRS VDPKKDFRES MIEMIEENNI RASKDLEDLL ACYLTLNPKE
301: YHDLIIHVFE QIWLQLTKTK

Arabidopsis Description

OFP2Transcription repressor OFP2 [Source:UniProtKB/Swiss-Prot;Acc:O04351]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.