CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01560	Canola	nucleus	62.29	82.58
Bra012575.1-P	Field mustard	nucleus	64.41	82.16
CDY09258	Canola	mitochondrion	48.94	72.19
AT4G18830.1	Thale cress	mitochondrion, nucleus, plastid	51.06	69.05
CDX99420	Canola	mitochondrion	46.82	67.58
CDX78899	Canola	mitochondrion	46.61	67.48
VIT_10s0003g01750.t01	Wine grape	nucleus	11.02	26.67
CDY32706	Canola	cytosol	2.75	26.0
CDY02814	Canola	cytosol	2.75	26.0
GSMUA_Achr9P05640_001	Banana	nucleus	13.77	22.49
TraesCS3B01G324100.1	Wheat	nucleus	13.77	22.34
TraesCS3A01G289400.1	Wheat	nucleus	13.98	22.3
TraesCS3D01G289200.1	Wheat	nucleus	13.98	22.3
HORVU3Hr1G071640.1	Barley	nucleus	13.56	22.15
CDX75076	Canola	nucleus	8.05	20.43
CDY43753	Canola	nucleus	7.84	19.89
Solyc02g072030.1.1	Tomato	mitochondrion, nucleus, plastid	15.68	19.63
CDY58970	Canola	mitochondrion	8.9	19.63
CDX92512	Canola	mitochondrion	8.9	19.63
CDY04827	Canola	nucleus	10.59	19.46
GSMUA_Achr6P31770_001	Banana	nucleus	12.08	19.45
CDY44933	Canola	mitochondrion	8.47	19.42
CDY42284	Canola	mitochondrion	8.47	19.32
CDX84837	Canola	nucleus	9.75	19.17
Zm00001d038714_P001	Maize	nucleus	12.71	19.05
PGSC0003DMT400073252	Potato	nucleus	16.31	18.78
Os05t0517100-00	Rice	mitochondrion	12.5	18.67
HORVU1Hr1G076490.1	Barley	nucleus	13.77	18.31
CDY09945	Canola	nucleus, plastid	11.65	18.27
EES19813	Sorghum	nucleus	12.92	18.21
CDY10735	Canola	nucleus	11.86	18.12
CDY67505	Canola	nucleus, plastid	11.44	17.94
CDY06241	Canola	mitochondrion	11.44	17.94
Zm00001d043470_P001	Maize	mitochondrion, nucleus	12.71	17.75
CDY02063	Canola	nucleus	11.65	17.68
TraesCS1D01G340300.1	Wheat	nucleus	12.92	17.68
CDX97830	Canola	nucleus	11.86	17.67
CDY29674	Canola	nucleus	12.08	17.59
EES01480	Sorghum	nucleus	13.14	17.51
KRH42918	Soybean	plastid	15.25	17.43
TraesCS1B01G350500.1	Wheat	cytosol, mitochondrion, nucleus	12.71	17.39
TraesCS1A01G338100.1	Wheat	cytosol	12.5	17.2
CDY62219	Canola	nucleus	11.23	17.15
KRH59028	Soybean	plastid	14.83	17.11
CDY43860	Canola	nucleus	10.38	16.9
CDY32990	Canola	nucleus	10.17	16.78
CDY29238	Canola	nucleus, plastid	10.59	16.5
CDY36485	Canola	nucleus	10.81	16.35
CDY59540	Canola	plastid	9.96	16.26
KRH11062	Soybean	plastid	12.71	16.22
CDY72229	Canola	nucleus	10.38	15.61
CDY43893	Canola	nucleus	10.17	15.24
CDY32705	Canola	mitochondrion	6.36	14.85
KRH21207	Soybean	plastid	12.92	14.73
CDY02815	Canola	plastid	5.08	12.12

Protein Annotations

MapMan:15.5.37	Gene3D:3.40.50.300	UniProt:A0A078JDH7	EnsemblPlants:CDY62560	ProteinID:CDY62560	ProteinID:CDY62560.1
ncoils:Coil	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045892	EnsemblPlantsGene:GSBRNA2T00036388001	InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C	InterPro:P-loop_NTPase
PFAM:PF04844	PFAM:PF10609	PFscan:PS51754	PANTHER:PTHR33057	PANTHER:PTHR33057:SF10	SUPFAM:SSF52540
UniParc:UPI0004EE0F8B	InterPro:YlxH/NBP35	SEG:seg	:	:	:

Description

BnaA03g58430DBnaA03g58430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JDH7]

Coordinates

chrLK034159:+:28760..31583

Molecular Weight (calculated)

53608.4 Da

IEP (calculated)

9.484

GRAVY (calculated)

-1.025

Length

472 amino acids

Sequence
(BLAST)

001: MMKWGKKKPI SSSSSSPGLS RAHHVSWFSK LTGSSDLKLA KEKKKQDDDE ASQKMSSKSS LSSTKRRNYT HESSKRLSAE KENAATRSAN MESNEKFEEI
101: MSSVRKKVRD FQRETMDGDK ETVIMTPRIQ VNRDRQQRCE RRNQKLLEQK PKRPEQNTEV KVKKPARRTG TSNSRENLVA HQWQHLKETK LREVKLKADK
201: QRKSMYLRRE LGTKENCKVR VFSPRSSEKC RVKAIEDLKK AKLRAKEQEM ENESFAVVKC SSDPQKDFRD SMIEMIMENG INRPEELKEL LTSQVDMDEG
301: EIPENANEHK QYQIQSFNCP GPLAETAGKS ESCAGCPNQQ ACATGTAPTG PDPGGVGKST FSAQLSFALD GMDHQQLRTE PGLCGTQPRC PVLSISFTHS
401: ESDDEPAIWR GPRKSAQIKE FLKEVDWGDH IDYLVVDTSP GTSDEHITII QSMVLSSLQF PRKSPWPTLE RE

Best Arabidopsis Sequence Match ( AT4G18830.1 )
(BLAST)

001: MMRWGRKKPV SSSSSSGLSR ALPVSWFSKL SGSSDLKPAK EKKQDEKASQ NISVKTSLSS TTRRSDIHEN SKRFQRVSVE KENSATRSAD KESNEKFEEI
101: MSSVRKKVRD FQKETCGFLE VEAMDRDNGT VILTPRIQVN RDKQRCERRD QRLLEQKPKR SEQDAGVKVK KPARRTGTGG YSREDSVILG HTITKPAHQW
201: EKLKEVKLRE VKLKADQQRK SLYLKRELNR IGTKENNKVR VFSPRASEKC RVKAIEDLKK AKQRAREHEL LIETADGGME NESFAVVKCS SDPQKDFRDS
301: MIEMIMENGI NHPEELKELL VCYLRLNTDE YHDMIISVFQ QVHNDFNFH

Arabidopsis Description

OFP5Transcription repressor OFP5 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZN1]
SUBAcon: [mitochondrion,plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.