CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68812
CDX72343
CDX75215
CDX78407
CDX80491
CDX83145
CDX88165
CDX93852
CDY13472
CDY34012
CDY45968
CDY64892
CDY66559
CDY68624

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30400.1	CDX93852	AT1G62990.1	15781858
AT2G30400.1	CDY45968	AT1G62990.1	15781858
AT2G30400.1	CDY64892	AT1G62990.1	15781858
AT2G30400.1	CDY66559	AT1G62990.1	15781858
AT2G30400.1	CDX83145	AT4G08150.1	15781858
AT2G30400.1	CDY34012	AT4G08150.1	15781858
AT2G30400.1	CDY68624	AT4G08150.1	15781858
AT2G30400.1	CDX68812	AT4G32040.1	15781858
AT2G30400.1	CDX72343	AT4G32040.1	15781858
AT2G30400.1	CDX75215	AT4G32040.1	15781858
AT2G30400.1	CDY13472	AT4G32040.1	15781858
AT2G30400.1	CDX78407	AT5G11060.1	15781858
AT2G30400.1	CDX80491	AT5G25220.1	15781858
AT2G30400.1	CDX88165	AT5G25220.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021632.1-P	Field mustard	nucleus	99.69	99.69
CDX97830	Canola	nucleus	92.59	94.64
CDY10735	Canola	nucleus	74.07	77.67
CDY02063	Canola	nucleus	72.53	75.56
CDY62219	Canola	nucleus	70.06	73.46
CDX84837	Canola	nucleus	53.09	71.67
AT2G30400.1	Thale cress	nucleus	70.37	71.25
CDY32706	Canola	cytosol	9.88	64.0
CDY02814	Canola	cytosol	9.26	60.0
CDY06241	Canola	mitochondrion	49.38	53.16
CDY09945	Canola	nucleus, plastid	48.77	52.49
CDY67505	Canola	nucleus, plastid	47.84	51.49
CDY04827	Canola	nucleus	25.93	32.68
CDY43860	Canola	nucleus	26.54	29.66
CDY32990	Canola	nucleus	25.93	29.37
GSMUA_Achr3P09850_001	Banana	mitochondrion	27.16	27.76
CDY44933	Canola	mitochondrion	15.43	24.27
CDY42284	Canola	mitochondrion	15.12	23.67
CDX75076	Canola	nucleus	13.58	23.66
CDY43753	Canola	nucleus	13.27	23.12
CDX92512	Canola	mitochondrion	14.81	22.43
CDY58970	Canola	mitochondrion	14.81	22.43
CDY09258	Canola	mitochondrion	19.75	20.0
CDX78899	Canola	mitochondrion	18.83	18.71
CDX99420	Canola	mitochondrion	18.83	18.65
CDY01560	Canola	nucleus	19.75	17.98
CDY29238	Canola	nucleus, plastid	15.74	16.83
CDY32705	Canola	mitochondrion	10.49	16.83
CDY36485	Canola	nucleus	16.05	16.67
CDY59540	Canola	plastid	14.51	16.26
CDY43893	Canola	nucleus	15.74	16.19
CDY72229	Canola	nucleus	15.43	15.92
CDY02815	Canola	plastid	8.33	13.64
CDY62560	Canola	nucleus	17.59	12.08

Protein Annotations

MapMan:15.5.37	GO:A0A078GWZ2	UniProt:A0A078GWZ2	EnsemblPlants:CDY29674	ProteinID:CDY29674	ProteinID:CDY29674.1
InterPro:DNA_bnd_dom_ovate	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892	EnsemblPlantsGene:GSBRNA2T00043439001
InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C	PFAM:PF04844	PFAM:PF13724	PFscan:PS51754
PANTHER:PTHR33057	PANTHER:PTHR33057:SF22	TIGRFAMs:TIGR01568	UniParc:UPI0004EED7DC	SEG:seg	:

Description

BnaA04g17530DBnaA04g17530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GWZ2]

Coordinates

chrLK032241:-:234526..235500

Molecular Weight (calculated)

37097.1 Da

IEP (calculated)

10.439

GRAVY (calculated)

-0.992

Length

324 amino acids

Sequence
(BLAST)

001: MGKYKFKISD MISNPWFHKL KDMTKQSKPK SKPISSSSSS HTHNKKSPSY APPRQSSTSH FSISLVAKSP HHNSPRNSLH RKRMSERKTL HKPSLKPITP
101: LGFNNSKING QDSSHCALPA LEKSPQSFEY SFYEKEDDGF VDPSNFKVDT KNKAFTKYKT KESSSMEKAC PASNLTKTPL KSHLSVKINK GKQEEDDEAC
201: RAEKKYKKQV SSGRNSSAGI NLRRVNSPRI QLSGTRRSTS RSESRQLVLE SYAVMKRSVD PKKDFRESMV EMIEENNIRA SKDLEDLLAC YLSLNAKEYH
301: DFIIQVFEQI WRQLTKQCEK THLM

Best Arabidopsis Sequence Match ( AT2G30400.1 )
(BLAST)

001: MGNYKFRISE MLPNAWFHKL KDVTKHSKPK NKASSSSSNT CSKKKPSSDS LPQHSYFSNS LVANNPPHHN SPRNSLHTKK MSKRKTLYKP SLKPLTPPPL
101: LVSASFNKSK INDQDSSYSL FPAIETSPES FVYSFYEEDD DDEFVEFSNF KINTKNKAFT KQKVKVIDSV EKACTASKPI KKPQKSHLSV KISRDEDDNE
201: YKAEKKYQRQ VSSGRKPSAG INLKRVNSPR IQLSGTRRST SRRSESKQDV LESFAVMKRS VDPKKDFRES MIEMIEENNI RASKDLEDLL ACYLTLNPKE
301: YHDLIIHVFE QIWLQLTKTK

Arabidopsis Description

OFP2Transcription repressor OFP2 [Source:UniProtKB/Swiss-Prot;Acc:O04351]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.