CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68812
CDX68906
CDX68925
CDX68927
CDX72343
CDX72383
CDX75215
CDX75307
CDX75313
CDX78407
CDX80491
CDX83145
CDX88165
CDX93852
CDY04827
CDY13472
CDY13511
CDY34012
CDY44476
CDY45383
CDY45968
CDY64892
CDY66559
CDY68624

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01840.1	CDX93852	AT1G62990.1	15781858
AT5G01840.1	CDY45968	AT1G62990.1	15781858
AT5G01840.1	CDY64892	AT1G62990.1	15781858
AT5G01840.1	CDY66559	AT1G62990.1	15781858
AT5G01840.1	CDX83145	AT4G08150.1	15781858
AT5G01840.1	CDY34012	AT4G08150.1	15781858
AT5G01840.1	CDY68624	AT4G08150.1	15781858
AT5G01840.1	CDX68812	AT4G32040.1	15781858
AT5G01840.1	CDX72343	AT4G32040.1	15781858
AT5G01840.1	CDX75215	AT4G32040.1	15781858
AT5G01840.1	CDY13472	AT4G32040.1	15781858
AT5G01840.1	CDX68906	AT4G32980.1	15781858
AT5G01840.1	CDX68925	AT4G32980.1	15781858
AT5G01840.1	CDX68927	AT4G32980.1	15781858
AT5G01840.1	CDX72383	AT4G32980.1	15781858
AT5G01840.1	CDX75307	AT4G32980.1	15781858
AT5G01840.1	CDX75313	AT4G32980.1	15781858
AT5G01840.1	CDY13511	AT4G32980.1	15781858
AT5G01840.1	CDY04827	AT5G01840.1	15781858
AT5G01840.1	CDX78407	AT5G11060.1	15781858
AT5G01840.1	CDX80491	AT5G25220.1	15781858
AT5G01840.1	CDX88165	AT5G25220.1	15781858
AT5G01840.1	CDY44476	AT5G41410.1	15781858
AT5G01840.1	CDY45383	AT5G41410.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040948.1-P	Field mustard	nucleus	98.83	96.58
AT5G01840.1	Thale cress	nucleus	70.82	67.41
CDY32706	Canola	cytosol	11.28	58.0
CDY02814	Canola	cytosol	11.28	58.0
CDX84837	Canola	nucleus	29.96	32.08
CDY62219	Canola	nucleus	32.68	27.18
CDY10735	Canola	nucleus	32.68	27.18
CDY02063	Canola	nucleus	32.68	27.01
CDX97830	Canola	nucleus	32.68	26.5
CDY29674	Canola	nucleus	32.68	25.93
CDY32990	Canola	nucleus	28.79	25.87
CDY43860	Canola	nucleus	28.4	25.17
CDY06241	Canola	mitochondrion	28.4	24.25
CDY67505	Canola	nucleus, plastid	28.4	24.25
CDY09945	Canola	nucleus, plastid	28.4	24.25
VIT_06s0004g07910.t01	Wine grape	nucleus	41.63	24.04
CDY43753	Canola	nucleus	16.34	22.58
CDX75076	Canola	nucleus	15.56	21.51
CDY44933	Canola	mitochondrion	16.34	20.39
CDY42284	Canola	mitochondrion	15.95	19.81
CDX92512	Canola	mitochondrion	15.56	18.69
CDY58970	Canola	mitochondrion	15.56	18.69
CDY09258	Canola	mitochondrion	22.57	18.12
CDY59540	Canola	plastid	20.23	17.99
CDX78899	Canola	mitochondrion	22.57	17.79
CDY01560	Canola	nucleus	24.12	17.42
CDY36485	Canola	nucleus	21.01	17.31
CDY29238	Canola	nucleus, plastid	20.23	17.16
CDY43893	Canola	nucleus	21.01	17.14
CDX99420	Canola	mitochondrion	21.4	16.82
CDY72229	Canola	nucleus	20.23	16.56
CDY32705	Canola	mitochondrion	11.67	14.85
CDY02815	Canola	plastid	9.73	12.63
CDY62560	Canola	nucleus	19.46	10.59

Protein Annotations

MapMan:15.5.37	GO:A0A078EV35	EnsemblPlants:CDY04827	ProteinID:CDY04827	ProteinID:CDY04827.1	InterPro:DNA_bnd_dom_ovate
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005856	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009987	GO:GO:0016043	GO:GO:0016049
GO:GO:0040007	GO:GO:0045892	GO:GO:0051510	EnsemblPlantsGene:GSBRNA2T00119538001	InterPro:IPR006458	InterPro:Ovate
InterPro:Ovate_C	PFAM:PF04844	PFAM:PF13724	PFscan:PS51754	PANTHER:PTHR33057	PANTHER:PTHR33057:SF22
TIGRFAMs:TIGR01568	UniParc:UPI0004EF471C	SEG:seg	:	:	:

Description

BnaAnng00090DTranscription repressor OFP1 [Source:Projected from Arabidopsis thaliana (AT5G01840) UniProtKB/Swiss-Prot;Acc:Q9LZW2]

Coordinates

chrLK031958:-:124430..125203

Molecular Weight (calculated)

28721.4 Da

IEP (calculated)

10.917

GRAVY (calculated)

-0.592

Length

257 amino acids

Sequence
(BLAST)

001: MGNYRFKLSE LVPNAWFYKL RDMGKSRKKQ HNSTVSLSPI KKHQPVPTPT PTTARSPRLP LRRSSSYYAR PRKSVRNRAT TVSSAPPKQV TEFRSDQLLI
101: PEESSSHSPC SSCVSSKAAT LTPPPELDLH PIITKPTTTV RKTAVSTSPA GVRLRLRSPR ISTRKTASSG GAQITGTSAT ASSRRSRAVV KASVDPRRDF
201: KESMEEMIAE NKIRESKDLE ELLACYLCLN SDEYHHIIIN VFKQIWLDLN LSPHLSL

Best Arabidopsis Sequence Match ( AT5G01840.1 )
(BLAST)

001: MGNNYRFKLS ELIPNAWFYK LRDMSKSKKK NLQSQPNSTT SKKKHHAVPT PTSTTPLSPR PPRRPSHSSK APPSHPPRKS SGNRLRHRAT VDSKSSTTSG
101: DSTTTETGSF SPDFRSDQVL LPDESLTGSW HSPCSSKLSK TATFTPPPEL ELRPIITKTA ATARKTAVNS PAGVRLRMRS PRISVSSSAR RSGSSARRSR
201: AVVKASVDPK RDFKESMEEM IAENKIRATK DLEELLACYL CLNSDEYHAI IINVFKQIWL DLNLPPPHSK

Arabidopsis Description

OFP1Transcription repressor OFP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.