Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13511 | Canola | nucleus | 88.94 | 91.99 |
| CDX75307 | Canola | nucleus | 42.48 | 86.49 |
| CDX68927 | Canola | nucleus | 82.74 | 81.13 |
| CDX75313 | Canola | nucleus | 82.08 | 79.61 |
| AT4G32980.1 | Thale cress | nucleus | 76.77 | 73.36 |
| CDX68906 | Canola | nucleus | 41.59 | 72.59 |
| CDX68925 | Canola | cytosol | 23.23 | 58.01 |
| VIT_04s0008g00880.t01 | Wine grape | nucleus | 44.25 | 33.96 |
| KRH52190 | Soybean | nucleus | 41.15 | 33.88 |
| KRH05496 | Soybean | nucleus | 42.7 | 33.8 |
| CDX83753 | Canola | nucleus | 14.16 | 33.68 |
| KRH61499 | Soybean | nucleus | 41.59 | 32.7 |
| CDY21826 | Canola | extracellular, plastid | 6.86 | 32.29 |
| PGSC0003DMT400076995 | Potato | nucleus | 38.05 | 31.85 |
| Solyc08g065420.2.1 | Tomato | nucleus | 38.5 | 31.13 |
| CDX73171 | Canola | nucleus | 17.48 | 27.34 |
| CDY47523 | Canola | nucleus | 17.48 | 27.34 |
| GSMUA_Achr4P02680_001 | Banana | nucleus | 33.41 | 26.08 |
| CDY45383 | Canola | nucleus | 13.5 | 23.19 |
| CDY29411 | Canola | nucleus | 19.69 | 22.88 |
| Zm00001d046223_P006 | Maize | nucleus | 24.11 | 22.2 |
| TraesCS7B01G269400.1 | Wheat | nucleus | 26.77 | 21.92 |
| Os06t0562300-00 | Rice | nucleus | 26.33 | 21.83 |
| TraesCS7D01G364500.1 | Wheat | nucleus | 26.55 | 21.82 |
| TraesCS7A01G358300.1 | Wheat | nucleus | 26.55 | 21.7 |
| KXG20197 | Sorghum | nucleus | 23.23 | 21.26 |
| Os02t0226600-01 | Rice | nucleus | 25.22 | 21.15 |
| CDY02261 | Canola | nucleus | 20.8 | 20.94 |
| CDY46209 | Canola | nucleus | 17.48 | 20.9 |
| CDX89711 | Canola | nucleus | 20.8 | 20.66 |
| Zm00001d016298_P001 | Maize | nucleus | 25.0 | 20.62 |
| EES04785 | Sorghum | nucleus | 24.56 | 19.68 |
| CDX77099 | Canola | nucleus | 19.47 | 19.6 |
| CDY30566 | Canola | nucleus | 19.25 | 19.42 |
| CDY52073 | Canola | nucleus | 19.69 | 18.9 |
| CDY39031 | Canola | nucleus | 19.69 | 18.62 |
| HORVU7Hr1G088090.4 | Barley | nucleus | 22.79 | 18.59 |
| CDX96653 | Canola | nucleus | 20.58 | 18.38 |
| CDX68129 | Canola | nucleus | 19.03 | 18.18 |
| Zm00001d002249_P001 | Maize | nucleus | 13.94 | 17.9 |
| CDX73170 | Canola | nucleus | 19.91 | 17.51 |
| CDY63699 | Canola | nucleus | 16.15 | 17.46 |
| CDY47524 | Canola | nucleus | 19.69 | 17.25 |
| CDY39359 | Canola | nucleus | 19.69 | 17.15 |
| CDX85896 | Canola | nucleus | 19.03 | 17.1 |
| CDX84171 | Canola | nucleus | 21.9 | 16.84 |
| CDY32069 | Canola | nucleus | 23.67 | 16.82 |
| CDY40420 | Canola | nucleus | 23.45 | 16.77 |
| CDX71279 | Canola | nucleus | 14.16 | 16.49 |
| CDY44476 | Canola | nucleus | 20.35 | 16.2 |
| CDX84585 | Canola | nucleus | 23.67 | 15.95 |
| CDX75085 | Canola | nucleus | 22.12 | 15.92 |
| CDX76849 | Canola | nucleus | 20.8 | 15.64 |
| CDX79646 | Canola | nucleus | 23.89 | 15.63 |
| CDY46061 | Canola | nucleus | 21.02 | 15.62 |
| CDY39669 | Canola | nucleus | 20.8 | 14.57 |
| CDY62523 | Canola | nucleus | 20.8 | 14.51 |
| CDX75604 | Canola | nucleus | 21.46 | 14.5 |
| CDY22463 | Canola | nucleus | 21.46 | 14.48 |
| CDY24765 | Canola | nucleus | 21.24 | 14.39 |
| CDX69252 | Canola | nucleus | 21.02 | 14.24 |
| CDY45321 | Canola | nucleus, plastid | 21.24 | 14.01 |
| CDY69132 | Canola | nucleus | 17.04 | 13.41 |
| CDY10473 | Canola | nucleus | 16.81 | 13.22 |
| CDY48107 | Canola | nucleus | 16.81 | 13.22 |
| CDY40327 | Canola | nucleus | 16.81 | 13.15 |
| CDX80798 | Canola | nucleus | 12.61 | 10.71 |
| CDY55113 | Canola | nucleus | 12.17 | 10.52 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.5 | GO:A0A078CBJ1 | EnsemblPlants:CDX72383 | ProteinID:CDX72383 | ProteinID:CDX72383.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00099876001 | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_KN_domain | InterPro:Homeobox_dom | InterPro:IPR001356 | PFAM:PF05920 | PFAM:PF07526 | InterPro:POX_dom |
| PFscan:PS50071 | PANTHER:PTHR11850 | PANTHER:PTHR11850:SF92 | SMART:SM00389 | SMART:SM00574 | SUPFAM:SSF46689 |
| UniParc:UPI0004EE0EFD | SEG:seg | : | : | : | : |
Description
BnaC07g44050D
Coordinates
chrLK031796:-:957913..959548
Molecular Weight (calculated)
51599.9 Da
IEP (calculated)
6.604
GRAVY (calculated)
-0.531
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNDNTFSSL VSVMTNQNNL LMDLIPSRED STSFSTMLPW NSMRLDPLQM GGFDIFSSFL TNKYLSSTSS SINVQENFEV MAPPPLPLPP FHHLDHLRPY
101: DDSSNNMWSL GENSGFHAYS YVEGVVGPSE PIASTFAEED VSDECSEISP YAATKMTSEQ ALTSEQASSS SKDIYNNVSH VIFGSKYLHS VQEILSQFAT
201: YSLHGLENNP QCYFSSQETE SRAAGSAFTS RLENQTEFVE GGFDQRRALE AKKTQLLDLL QMVDDKYSHC VDEIHTVVSA FHAATELDPQ LHTRFALQTI
301: SFLYKNLRER ISKKILMMGS VLERGKEKSQ ENSIIHQHCL LQQMKHKNHQ IWRPQRGLPE KSVSVLRTWM FQNFLHPYPT DSEKHLLAIR SGLTRSQVSN
401: WFINARVRLW KPMIEDMYAE MNKRKLNNTH LQGSGGSRRI PKSIMMTQER NK
101: DDSSNNMWSL GENSGFHAYS YVEGVVGPSE PIASTFAEED VSDECSEISP YAATKMTSEQ ALTSEQASSS SKDIYNNVSH VIFGSKYLHS VQEILSQFAT
201: YSLHGLENNP QCYFSSQETE SRAAGSAFTS RLENQTEFVE GGFDQRRALE AKKTQLLDLL QMVDDKYSHC VDEIHTVVSA FHAATELDPQ LHTRFALQTI
301: SFLYKNLRER ISKKILMMGS VLERGKEKSQ ENSIIHQHCL LQQMKHKNHQ IWRPQRGLPE KSVSVLRTWM FQNFLHPYPT DSEKHLLAIR SGLTRSQVSN
401: WFINARVRLW KPMIEDMYAE MNKRKLNNTH LQGSGGSRRI PKSIMMTQER NK
001: MDNNNNNNTF SSLDNVMTNQ NPLLMDFIPS REDSTSFSTM LPWNTIRSDP LQMGGFDIFN SMLTNKYLSS SPRSIDVQDN RNVEFMAPPP HPPPLHPLDH
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK
Arabidopsis Description
ATH1Homeobox protein ATH1 [Source:UniProtKB/Swiss-Prot;Acc:P48731]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.