CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30566	Canola	nucleus	96.21	96.43
AT2G27220.2	Thale cress	nucleus	69.93	69.93
CDX83753	Canola	nucleus	17.82	42.11
CDX75307	Canola	nucleus	17.37	35.14
CDY47523	Canola	nucleus	20.49	31.83
CDX73171	Canola	nucleus	20.49	31.83
CDY46209	Canola	nucleus	25.61	30.42
CDY45383	Canola	nucleus	17.82	30.42
CDY21826	Canola	extracellular, plastid	6.46	30.21
CDY29411	Canola	nucleus	25.39	29.31
CDY02261	Canola	nucleus	28.51	28.51
KRH26689	Soybean	nucleus	32.74	28.43
CDX89711	Canola	nucleus	28.73	28.35
Os11t0158600-00	Rice	nucleus	25.39	27.14
CDX68129	Canola	nucleus	26.28	24.95
CDX71279	Canola	nucleus	21.38	24.74
CDY63699	Canola	nucleus	22.94	24.64
CDY52073	Canola	nucleus	25.84	24.63
CDY39031	Canola	nucleus	25.39	23.85
CDX84171	Canola	nucleus	31.18	23.81
CDX85896	Canola	nucleus	26.28	23.46
CDY40420	Canola	nucleus	32.96	23.42
CDX96653	Canola	nucleus	26.28	23.32
CDY39359	Canola	nucleus	26.95	23.31
CDY32069	Canola	nucleus	32.96	23.27
CDX73170	Canola	nucleus	26.06	22.76
CDY47524	Canola	nucleus	26.06	22.67
CDX84585	Canola	nucleus	33.85	22.65
Solyc11g068950.1.1	Tomato	nucleus	33.18	22.54
PGSC0003DMT400015183	Potato	nucleus	33.85	22.22
CDX79646	Canola	nucleus	33.63	21.85
CDX75085	Canola	nucleus	30.51	21.82
TraesCS4B01G114600.1	Wheat	nucleus	32.07	21.75
VIT_06s0009g00410.t01	Wine grape	nucleus	35.19	21.7
TraesCS4D01G111900.1	Wheat	nucleus	32.07	21.69
TraesCS4A01G200800.1	Wheat	nucleus	32.07	21.69
Solyc06g074120.2.1	Tomato	nucleus	33.63	21.6
HORVU4Hr1G020710.1	Barley	nucleus	24.94	21.54
PGSC0003DMT400050527	Potato	nucleus	33.85	21.53
KRH22635	Soybean	nucleus	33.63	21.51
Zm00001d053151_P003	Maize	nucleus	31.85	21.31
CDY44476	Canola	nucleus	26.5	20.95
EES09309	Sorghum	nucleus	31.85	20.72
CDY13511	Canola	nucleus	20.04	20.59
KRH25319	Soybean	nucleus	33.63	20.38
CDY10473	Canola	nucleus	26.06	20.35
CDY40327	Canola	nucleus	26.06	20.24
CDX76849	Canola	nucleus	26.73	19.97
CDY46061	Canola	nucleus	26.95	19.9
KRG88864	Soybean	nucleus	33.85	19.9
CDX68927	Canola	nucleus	20.27	19.74
CDX72383	Canola	nucleus	19.6	19.47
CDY69132	Canola	nucleus	24.72	19.34
CDX68925	Canola	cytosol	7.8	19.34
CDX75313	Canola	nucleus	20.04	19.31
CDY48107	Canola	nucleus	24.5	19.13
CDY39669	Canola	nucleus	27.17	18.91
CDY62523	Canola	nucleus	27.17	18.83
CDX75604	Canola	nucleus	26.95	18.09
CDX69252	Canola	nucleus	26.73	17.99
CDY55113	Canola	nucleus	20.49	17.59
CDY45321	Canola	nucleus, plastid	26.73	17.52
CDY24765	Canola	nucleus	25.61	17.24
CDY22463	Canola	nucleus	25.39	17.01
CDX80798	Canola	nucleus	20.04	16.92
Os11t0158832-00	Rice	nucleus	7.35	12.55
CDX68906	Canola	nucleus	4.23	7.34

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	GO:A0A078CM47	EnsemblPlants:CDX77099	ProteinID:CDX77099	ProteinID:CDX77099.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
EnsemblPlantsGene:GSBRNA2T00127690001	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356
PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR11850
PANTHER:PTHR11850:SF194	SMART:SM00389	SMART:SM00574	SUPFAM:SSF46689	UniParc:UPI0004EB0FF0	SEG:seg

Description

BnaC04g38940D

Coordinates

chrLK031809:-:1089343..1092104

Molecular Weight (calculated)

50701.3 Da

IEP (calculated)

8.325

GRAVY (calculated)

-0.576

Length

449 amino acids

Sequence
(BLAST)

001: MAVFFQGETE MREPSSDLFM VNLNPSPDQT MTINAHNNHF YNLCFAPQQH PQRMNKYEVL DHIEQANCSA ISTVSNGRVT QSFRALAPTY LRVAQELLNE
101: IVHVGRGSRG AKQEQQMNNE SATYGLYNGV GNINGGPKPG VCRQELQLKR AKLISMVEKV EQIYKQYHDQ MQTVISSFEQ EAGLGSANSY THMALQTISK
201: KFRAVKDMIC LQIKHINNLL GEKECEGVCL AKQLGKMPHN HSNAWRPQRG LPETAVSVLR AWLFNHFLHP YPRDLDKEML AKQTGLTKSQ VSNWFINARV
301: RMWKPMVEEM YLEEMNIEES RKRGNLSEHG NKGSSSKQLC NNTTSDESSN WIIPAFHQGF IKNETSMQNS FSSCSVMTFG KQHANQAKLI QFSGGFENYH
401: AMVGNSVSLS LGMPHSCDQS LNNIQFGSTS NETKISGKYP PSLTYQNID

Best Arabidopsis Sequence Match ( AT2G27220.3 )
(BLAST)

001: MAAFFLGESE MREHSSDLFM MTLNPFREQT TTTNAHDDHF YNLCFGSQQY RPRDEVGHIE QGNSSISTFS NGGVFRALAP IYLKAAQELL NEIVNVGNGS
101: HGAKQERPVS KESTIYGVED INGGYKPGVA ALQMKKAKLI SMGEMVEQRY KQYHDQMQTI ISSFEQAAGL GSANSYTHMA LQTISKQFRA VKDMISLQIK
201: QINKLLGQKE FDEQLKKLGK MAHHHSNAWR PQRGLPEKAV SVLRSWLFEH FLHPYPRDLD KVMLAKQTGL TKSQVSNWFI NARVRMWKPL VEELYSEEMD
301: IEESRKGSDR YSTKGSSSKQ PYNNTTSNES SNTILPAFRQ GFTETETPRQ NSSSSCSVVM RFTKQHMNQA NFINFNGGFE NYHTMDGNSV SLSLGLPHSC
401: DQTFNNIHFE STSHGTENSA IYSSSTYQIM D

Arabidopsis Description

BLH5BEL1-like homeodomain 5 [Source:TAIR;Acc:AT2G27220]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.