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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400015183 Potato nucleus 92.85 94.88
KRH26689 Soybean nucleus 41.06 55.51
Solyc11g068950.1.1 Tomato nucleus 49.21 52.04
KRH22635 Soybean nucleus 49.36 49.15
VIT_06s0009g00410.t01 Wine grape nucleus 50.93 48.9
KRH25319 Soybean nucleus 46.78 44.13
Solyc10g086640.1.1 Tomato nucleus 16.17 43.8
KRG88864 Soybean nucleus 46.92 42.93
Solyc01g007070.2.1 Tomato nucleus 42.63 42.57
Os11t0158600-00 Rice nucleus 25.46 42.38
HORVU4Hr1G020710.1 Barley nucleus 30.47 40.96
TraesCS4D01G111900.1 Wheat nucleus 38.48 40.51
TraesCS4B01G114600.1 Wheat nucleus 38.34 40.48
TraesCS4A01G200800.1 Wheat nucleus 38.34 40.36
EES09309 Sorghum nucleus 38.77 39.28
Zm00001d053151_P003 Maize nucleus 37.63 39.2
Os11t0158832-00 Rice nucleus 13.3 35.36
AT2G27220.2 Thale cress nucleus 22.03 34.3
Bra034335.1-P Field mustard nucleus 21.6 33.71
CDY30566 Canola nucleus 21.6 33.71
CDX77099 Canola nucleus 21.6 33.63
Solyc01g109980.2.1 Tomato nucleus 30.62 33.18
Solyc04g080790.2.1 Tomato nucleus 31.19 32.98
Solyc04g080780.2.1 Tomato nucleus 18.6 32.5
Solyc09g011380.2.1 Tomato nucleus 21.75 30.16
Solyc08g081400.2.1 Tomato nucleus 26.18 28.42
Solyc11g069890.1.1 Tomato golgi 22.75 27.41
Solyc02g065490.2.1 Tomato nucleus 23.61 26.44
Solyc04g079830.2.1 Tomato nucleus 25.32 25.58
Solyc02g089940.2.1 Tomato nucleus 26.47 25.48
Solyc08g065420.2.1 Tomato nucleus 16.02 20.04
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.3.5EMBL:AF375966ncoils:CoilGO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0006139GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
InterPro:Homeobox-like_sfInterPro:Homeobox_KN_domainInterPro:Homeobox_domInterPro:IPR001356PFAM:PF05920PFAM:PF07526
InterPro:POX_domPFscan:PS50071PANTHER:PTHR11850PANTHER:PTHR11850:SF135UniProt:Q7Y0Z7SMART:SM00389
SMART:SM00574SUPFAM:SSF46689EnsemblPlantsGene:Solyc06g074120.2EnsemblPlants:Solyc06g074120.2.1UniParc:UPI00001A2F41SEG:seg
Description
Bell-like homeodomain protein 2 [Source:UniProtKB/TrEMBL;Acc:Q7Y0Z7]
Coordinates
chr6:+:45842057..45846764
Molecular Weight (calculated)
77667.0 Da
IEP (calculated)
7.377
GRAVY (calculated)
-0.706
Length
699 amino acids
Sequence
(BLAST)
001: MYYQGTSDNN IQADHHQQQH NNLGNSNNNI QTLYLMNPNS YMQGYTTTDT QQHLQQQQNQ HQLLFLNSAP AGGNALSHAN IQHAPLQQQH FVGVPLPAVS
101: LHDQINHHGL LQRMWNNQDQ SQQVIVPSST VVSATSCGGT TTDLASQLAF QRPIVVSPTP QHRQQQQQQG GLSLSLSPQQ QQQISFNNNI SSSSPRTNNV
201: TIRGTMDGCS SNMILGSKYL KAAQELLDEV VNIVGKSNKG DDQKKDNSMN KELIPLVSDV NTNSSGGGGG ESSSRQKNEV AIELTTAQRQ ELQMKKAKLL
301: AMLEEVEQRY RQYHHQMQII VSSFEQVAGV GSAKSYTQLA LHAISKQFRC LKDAISEQVK ATSKSLGEDE GLGGKIEGSR LKFVDHHLRQ QRALQQLGMM
401: QPNAWRPQRG LPERAVSVLR AWLFEHFLHP YPKDSDKIML AKQTGLTRSQ VSNWFINARV RLWKPMVEEM YLEEVKNQEQ NSSNTSGDNK NKETNISAPN
501: EEKQPIITSS LLQDGTTQAE ISTSTISTSP TAGASLHHAH NFSFLGSFNM ENTTTTVDHI ENNAKKPRNH DMHKFSPSSI LSSVEMEAKA RESTNKGFTN
601: PLMAAYAMGD FGRFDPHDQQ MTANFHGNNG VSLTLGLPPS ENLAMPVSQQ NYLSNELGSR PEIGSHYNRM GYENIDFQSG NKRFPTQLLP DFVTGNLGT
Best Arabidopsis Sequence Match ( AT2G16400.1 )
(BLAST)
001: MATYYKTGSS EIYSRPEFVP GNAMNYTNSF TETFPRDSTN NVSPSKEIQV LSSLGGVSQM VEIQDSGSWR DQEDNDRNRF PVMRRLGLSS QIETSRGNNN
101: NEYATQVVSG FTRTIHNSKY LKAAQELLDE TVNVKKALKQ FQPEGDKINE VKEKNLQTNT AEIPQAERQE LQSKLSKLLS ILDEVDRNYK QYYHQMQIVV
201: SSFDVIAGCG AAKPYTALAL QTISRHFRCL RDAISGQILV IRKSLGGEQD GSDGRGVGIS RLRNVDQQVR QQRALQRLGV MQPHTWRPQR GLPDSSVLVL
301: RAWLFEHFLH PYPKDSDKIM LARQTGLSRG QVSNWFINAR VRLWKPMVEE MYKEEFTDAL QENDPNQSSE NTPEITEIQE LQTESSSNNG HVPGVASSSM
401: RQNTVAHGGD RFMMVTDMTR NGNGGMSLTL GIQNSDARGD VPMSGGIDNY KNTISGTDLQ YLNSRNHQHQ IGSSQLLHDF VA
Arabidopsis Description
BLH7BEL1-like homeodomain protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIW1]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.