Factsheet for Solyc04g079830.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g11800.t01	Wine grape	nucleus	28.76	57.02
GSMUA_Achr5P08840_001	Banana	nucleus	25.43	55.52
Bra011713.1-P	Field mustard	nucleus	27.31	55.43
Bra010577.1-P	Field mustard	nucleus	25.87	54.41
GSMUA_Achr4P14670_001	Banana	nucleus	22.98	53.54
GSMUA_Achr4P07450_001	Banana	nucleus	22.98	52.48
GSMUA_Achr1P26900_001	Banana	nucleus	29.91	52.01
CDX69252	Canola	nucleus	43.64	45.28
CDX75604	Canola	nucleus	43.35	44.84
Solyc02g065490.2.1	Tomato	nucleus	40.17	44.55
Solyc02g089940.2.1	Tomato	nucleus	46.1	43.94
CDY22463	Canola	nucleus	42.34	43.73
CDY24765	Canola	nucleus	41.47	43.03
Solyc10g086640.1.1	Tomato	nucleus	16.04	43.02
GSMUA_Achr7P27440_001	Banana	nucleus	40.46	40.94
AT4G36870.2	Thale cress	nucleus	42.49	39.78
TraesCS4B01G063100.1	Wheat	nucleus, plastid	38.73	36.17
Zm00001d033898_P002	Maize	nucleus	39.02	35.76
EER93512	Sorghum	nucleus, plastid	39.45	35.45
TraesCS4A01G252100.2	Wheat	nucleus	39.31	35.28
Os03t0732100-01	Rice	nucleus	39.6	34.68
TraesCS4D01G062100.1	Wheat	nucleus	39.31	33.87
HORVU4Hr1G010430.6	Barley	nucleus	39.31	33.62
Solyc09g011380.2.1	Tomato	nucleus	22.25	30.56
Solyc04g080780.2.1	Tomato	nucleus	17.49	30.25
Solyc08g081400.2.1	Tomato	nucleus	27.6	29.66
Solyc01g109980.2.1	Tomato	nucleus	24.57	26.36
Solyc01g007070.2.1	Tomato	nucleus	25.72	25.43
Solyc06g074120.2.1	Tomato	nucleus	25.58	25.32
Solyc11g068950.1.1	Tomato	nucleus	23.84	24.96
Solyc11g069890.1.1	Tomato	golgi	20.38	24.31
Solyc04g080790.2.1	Tomato	nucleus	22.98	24.05
Solyc08g065420.2.1	Tomato	nucleus	14.31	17.71

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653
GO:GO:0009965	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356
UniProt:K4BV62	PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850
PANTHER:PTHR11850:SF136	SMART:SM00389	SMART:SM00574	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc04g079830.2	EnsemblPlants:Solyc04g079830.2.1
UniParc:UPI00027673AD	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:-:64135955..64146864

Molecular Weight (calculated)

78003.2 Da

IEP (calculated)

6.971

GRAVY (calculated)

-0.775

Length

692 amino acids

Sequence
(BLAST)

001: MSHSFHQQQG FYNFSNVYER SATTTTKHED MLRVQGFEPQ QVEVAAADVE PPPTATVYDD GGMLTEIISY PSAWRKTATE ILDDQIQSSN YRSWPQKEQQ
101: HLQQQQQQLL PQSIINDTEL PLMNPHIKPS SPPRSSSSLH MLLPNSVDTN NLLHHQGFHL LNPAPVETPS QFTWIPGSSS GEDNSARIGR VVDGQGLSLS
201: LSRNFEAAAK LEDLRIGNGE IYLHNNQGLL GPINNNNHHH HHHQLLHSGV IMDHRTPPHP HPLPPHSSTG HHHQIHVGYA ASSPRISNAL RNSRYVKATQ
301: ELLEEFCCVG RGNFKNQRVK KLDDDQNPNS NSESEDHRGP SKDNHPPLSA AERSEYQRRK IKLLSMLDEV DARYTRYCEQ MQAMVNSFDS VIGYGAAAPY
401: TALAQKAMSR HFRCIKDAIV GQLKQTCKYL GEKDVTGTSG LTKGETPRLK MLDQKLRQQK ALHQMGMLDS DAWRPQRGLP ERSVNVLRAW LFEHFLHPYP
501: SEADKHLLSR QTGLSKNQVS NWFINARVRL WKPMVEEMYQ QETKEAETDQ EEEEQEQQQQ EKQAQIPMHN MATSPAAATT KTTTMSLSSS VRSKLNANER
601: DPSENIINYR QYALGNQLVM LQSDDTTTAS TSTHHYFTAV NAVDLVADPN AVNTAAFGSQ QAGDVSLTLG LRHSENVPRK PAQFQLRDFG AY

Best Arabidopsis Sequence Match ( AT4G36870.1 )
(BLAST)

001: MGITKTSPNT TILLKTFHNN SMSQDYHHHH HHNQHQGGIF NFSNGFDRSD SPNLTTQQKQ EHQRVEMDEE SSVAGGRIPV YESAGMLSEM FNFPGSSGGG
101: RDLDLGQSFR SNRQLLEEQH QNIPAMNATD SATATAAAMQ LFLMNPPPPQ QPPSPSSTTS PRSHHNSSTL HMLLPSPSTN TTHHQNYTNH MSMHQLPHQH
201: HQQISTWQSS PDHHHHHHNS QTEIGTVHVE NSGGHGGQGL SLSLSSSLEA AAKAEEYRNI YYGANSSNAS PHHQYNQFKT LLANSSQHHH QVLNQFRSSP
301: AASSSSMAAV NILRNSRYTT AAQELLEEFC SVGRGFLKKN KLGNSSNPNT CGGDGGGSSP SSAGANKEHP PLSASDRIEH QRRKVKLLTM LEEVDRRYNH
401: YCEQMQMVVN SFDIVMGHGA ALPYTALAQK AMSRHFRCLK DAVAAQLKQS CELLGDKDAA GISSSGLTKG ETPRLRLLEQ SLRQNRAFHQ MGMMEQEAWR
501: PQRGLPERSV NILRAWLFEH FLHPYPSDAD KHLLARQTGL SRNQVSNWFI NARVRLWKPM VEEMYQQESK EREREEELEE NEEDQETKNS NDDKSTKSNN
601: NESNFTAVRT TSQTPTTTAP DASDADAAVA TGHRLRSNIN AYENDASSLL LPSSYSNAAA PAAVSDDLNS RYGGSDAFSA VATCQQSVGG FDDADMDGVN
701: VIRFGTNPTG DVSLTLGLRH AGNMPDKDAS FCVREFGGF

Arabidopsis Description

BLH2BEL1-like homeodomain protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW80]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.