Factsheet for TraesCS4A01G252100.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G063100.1	Wheat	nucleus, plastid	93.39	97.17
TraesCS4D01G062100.1	Wheat	nucleus	97.54	93.65
HORVU4Hr1G010430.6	Barley	nucleus	94.42	89.99
EER93512	Sorghum	nucleus, plastid	84.57	84.68
Zm00001d033898_P002	Maize	nucleus	81.71	83.44
Os03t0732100-01	Rice	nucleus	81.84	79.87
GSMUA_Achr5P08840_001	Banana	nucleus	25.03	60.88
Bra032147.1-P	Field mustard	nucleus	23.99	57.81
Bra011713.1-P	Field mustard	nucleus	25.29	57.18
Bra010577.1-P	Field mustard	nucleus	24.25	56.84
VIT_18s0001g11800.t01	Wine grape	nucleus	24.38	53.87
PGSC0003DMT400056612	Potato	nucleus	20.23	52.88
KRH76894	Soybean	nucleus	44.62	48.45
KRH28575	Soybean	nucleus	43.84	47.94
KRH69971	Soybean	nucleus	41.25	47.18
Solyc02g089940.2.1	Tomato	nucleus	43.84	46.56
PGSC0003DMT400026172	Potato	nucleus	44.36	46.34
CDX76849	Canola	nucleus	35.8	45.92
CDY46061	Canola	nucleus	35.93	45.56
Bra039212.1-P	Field mustard	nucleus	35.8	45.39
CDX69252	Canola	nucleus	39.04	45.13
KRH08329	Soybean	nucleus	45.4	45.05
Solyc02g065490.2.1	Tomato	nucleus	36.32	44.87
CDX75604	Canola	nucleus	38.91	44.84
CDY39669	Canola	nucleus	37.09	44.34
VIT_04s0023g01020.t01	Wine grape	nucleus	48.51	44.21
CDY62523	Canola	nucleus	37.09	44.14
CDY22463	Canola	nucleus	38.13	43.88
CDY24765	Canola	nucleus	37.61	43.48
AT4G36870.2	Thale cress	nucleus	39.69	41.41
AT2G23760.4	Thale cress	nucleus	36.45	41.38
Solyc04g079830.2.1	Tomato	nucleus	35.28	39.31
TraesCS7A01G022600.1	Wheat	nucleus	22.05	35.2
TraesCS4A01G469900.1	Wheat	nucleus	22.57	35.08
TraesCS1A01G183400.1	Wheat	nucleus	24.12	31.74
TraesCS4A01G289400.1	Wheat	nucleus	25.68	31.03
TraesCS1A01G281100.1	Wheat	nucleus	22.44	30.14
TraesCS5A01G514700.1	Wheat	nucleus	23.22	29.59
TraesCS5A01G007800.1	Wheat	nucleus	24.64	29.23
TraesCS4A01G022700.1	Wheat	nucleus	22.31	29.1
TraesCS4A01G289500.1	Wheat	nucleus	14.01	29.03
TraesCS4A01G200800.1	Wheat	nucleus	23.87	27.71
TraesCS3A01G363900.1	Wheat	nucleus	21.79	26.75
TraesCS7A01G358300.1	Wheat	nucleus	15.05	20.98

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	PFAM:PF05920	PFAM:PF07526
InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF136	InterPro:Peptidase_S1_PA	SMART:SM00389
SMART:SM00574	SUPFAM:SSF46689	SUPFAM:SSF50494	EnsemblPlantsGene:TraesCS4A01G252100	EnsemblPlants:TraesCS4A01G252100.2	TIGR:cd00086
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:+:564148415..564157977

Molecular Weight (calculated)

81553.9 Da

IEP (calculated)

6.778

GRAVY (calculated)

-0.593

Length

771 amino acids

Sequence
(BLAST)

001: MGIAAPPCQQ TTTQHVGAPR SSAAIYDGRP ATASSMSHSQ GFHQGSSGVY GFSSDGFDRP GSSQQDQQQE HEQQQHHVAQ QSRRDKMRVQ GFDPAAAAAH
101: GLLPIDGDEH VEPGTMYDHA AAAGASNMLA EMFNFSAQTP SGPSATELLA SQMNANYRFG FRQQAPGAVV AGLPGDGGWF GSGGPGRADV VLGGANLLGE
201: TSSPKQQAGG MAGLATDPAA AMQLFLMNPQ QQQQQQSRSS PTSPPPSDAQ SAIQHHEAFQ AYGNAASSFG GGGAGVVEGQ GLSLSLSPSL QQLEMAKQAE
301: ELRVRDGVLY FNRQQQQQQQ QAPSVQQLPM ALHGQVGAMG QQLHVGYGPA GVAGVLRNSK YTRAAQELLD EFCSVGRGQT IKGGGRGAGG SSSNPNASKG
401: GPSSSGAAQS PSSASKEPPQ LSPADRFEQQ RKKAKLISML DEVDRRYNHY CDQMQMVVNF FDSVMGFGAA TPYTALAQKA MSRHFRCLKD AIAAQLRHTC
501: ELLGEKDAGT SSGLTKGETP RLRAIDQSLR QQRAFHHMGM MEQEAWRPQR GLPERSVSIL RSWLFEHFLH PYPSDADKHL LARQTGLSRN QVSNWFINAR
601: VRLWKPMIEE MYQQETKELE GSSAGGGGGG PESGNDPSGA DDLHSPTSTG AQQHPQQQVV MQHGGGRYGQ QEHGMSGVHP HKLDPGAGPS VADAAFVGLD
701: PAELLGGDAH VGAADDLYGR FEPGVRMRYG PATTGAVSGD VSLTLGLQHA GAGNQGPDGS GRFSLRDYSG C

Best Arabidopsis Sequence Match ( AT2G23760.2 )
(BLAST)

001: MGLATTTSSM SQDYHHHQGI FSFSNGFHRS SSTTHQEEVD ESAVVSGAQI PVYETAGMLS EMFAYPGGGG GGSGGEILDQ STKQLLEQQN RHNNNNNSTL
101: HMLLPNHHQG FAFTDENTMQ PQQQQHFTWP SSSSDHHQNR DMIGTVHVEG GKGLSLSLSS SLAAAKAEEY RSIYCAAVDG TSSSSNASAH HHQFNQFKNL
201: LLENSSSQHH HHQVVGHFGS SSSSPMAASS SIGGIYTLRN SKYTKPAQEL LEEFCSVGRG HFKKNKLSRN NSNPNTTGGG GGGGSSSSAG TANDSPPLSP
301: ADRIEHQRRK VKLLSMLEEV DRRYNHYCEQ MQMVVNSFDQ VMGYGAAVPY TTLAQKAMSR HFRCLKDAVA VQLKRSCELL GDKEAAGAAS SGLTKGETPR
401: LRLLEQSLRQ QRAFHHMGMM EQEAWRPQRG LPERSVNILR AWLFEHFLNP YPSDADKHLL ARQTGLSRNQ VSNWFINARV RLWKPMVEEM YQQEAKEREE
501: AEEENENQQQ QRRQQQTNNN DTKPNNNENN FTVITAQTPT TMTSTHHEND SSFLSSVAAA SHGGSDAFTV ATCQQDVSDF HVDGDGVNVI RFGTKQTGDV
601: SLTLGLRHSG NIPDKNTSFS VRDFGDF

Arabidopsis Description

BLH4BEL1-like homeodomain 4 [Source:TAIR;Acc:AT2G23760]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.