CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76894	Soybean	nucleus	94.89	94.23
Bra032147.1-P	Field mustard	nucleus	28.94	63.75
KRH08329	Soybean	nucleus	69.93	63.45
KRH69971	Soybean	nucleus	60.0	62.76
GSMUA_Achr5P08840_001	Banana	nucleus	28.09	62.46
VIT_04s0023g01020.t01	Wine grape	nucleus	72.34	60.28
GSMUA_Achr4P14670_001	Banana	nucleus	25.25	59.93
GSMUA_Achr4P07450_001	Banana	nucleus	25.53	59.41
GSMUA_Achr1P26900_001	Banana	nucleus	33.48	59.3
Solyc02g089940.2.1	Tomato	nucleus	60.85	59.09
PGSC0003DMT400026172	Potato	nucleus	60.85	58.13
CDX76849	Canola	nucleus	47.38	55.57
CDY46061	Canola	nucleus	47.52	55.1
Bra039212.1-P	Field mustard	nucleus	47.23	54.77
CDY39669	Canola	nucleus	47.38	51.78
CDY62523	Canola	nucleus	47.38	51.54
GSMUA_Achr7P27440_001	Banana	nucleus	49.08	50.58
AT2G23760.4	Thale cress	nucleus	47.8	49.63
TraesCS4B01G063100.1	Wheat	nucleus, plastid	47.23	44.94
Zm00001d033898_P002	Maize	nucleus	48.09	44.9
EER93512	Sorghum	nucleus, plastid	48.94	44.81
TraesCS4A01G252100.2	Wheat	nucleus	47.94	43.84
Os03t0732100-01	Rice	nucleus	48.51	43.29
TraesCS4D01G062100.1	Wheat	nucleus	48.09	42.22
HORVU4Hr1G010430.6	Barley	nucleus	47.52	41.41
KRH26689	Soybean	nucleus	25.25	34.43
KRH27902	Soybean	nucleus	30.78	33.8
KRH77572	Soybean	nucleus	30.92	33.75
KRH59951	Soybean	nucleus	30.21	33.54
KRH41225	Soybean	nucleus	30.35	33.13
KRH61118	Soybean	nucleus	20.14	32.27
KRH51793	Soybean	nucleus	19.72	31.1
KRH51485	Soybean	nucleus	23.69	30.04
KRH05875	Soybean	nucleus	25.96	29.95
KRH75724	Soybean	nucleus	25.82	29.89
KRH32854	Soybean	nucleus	27.8	29.65
KRH72182	Soybean	nucleus	27.8	29.52
KRH00065	Soybean	nucleus	23.97	29.49
KRH22635	Soybean	nucleus	29.22	29.34
KRH65931	Soybean	nucleus	25.39	29.01
KRH15136	Soybean	nucleus	25.82	28.62
KRH68008	Soybean	nucleus	26.95	27.98
KRG96259	Soybean	nucleus	26.95	27.94
KRH51792	Soybean	nucleus	24.82	27.47
KRH61114	Soybean	nucleus	24.96	27.24
KRH60794	Soybean	nucleus	25.39	27.04
KRH25319	Soybean	nucleus	27.09	25.78
KRH30618	Soybean	nucleus	27.38	25.13
KRG88864	Soybean	nucleus	26.95	24.87
KRH25064	Soybean	nucleus	26.81	24.87
KRH22860	Soybean	nucleus	26.81	24.05
KRH26495	Soybean	nucleus	26.67	23.68
KRH52190	Soybean	nucleus	16.03	20.58
KRH05496	Soybean	nucleus	15.32	18.91
KRH61499	Soybean	nucleus	15.18	18.61

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100777243	MapMan:15.5.3.5	EMBL:ACUP02006757	ncoils:Coil	EnsemblPlantsGene:GLYMA_11G062300
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356
UniProt:K7LNB7	EnsemblPlants:KRH28575	ProteinID:KRH28575	ProteinID:KRH28575.1	PFAM:PF05920	PFAM:PF07526
InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF136	SMART:SM00389	SMART:SM00574
SUPFAM:SSF46689	UniParc:UPI000233D14C	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:4694478..4702680

Molecular Weight (calculated)

76537.4 Da

IEP (calculated)

7.551

GRAVY (calculated)

-0.633

Length

705 amino acids

Sequence
(BLAST)

001: MSQDFQQGIF SFPNGLERGR LVSPQQQIRR DKVRFEAAAP LVGIEEEEPV YETAGMLSEM FNFPPATELL EQQHATATFR AARQAGEWYG NRQQQQQISG
101: INADSAAAMQ LFLMNPQTRS PSPPQTHATP SSTLHMLLPN PSSNSSLQGF TGSAAGGSFG QFTWVPESAH QQGGVVEGQG LSLSLSSSLE AAKAEELRMG
201: DSGFLYYNHQ QGGGGGGGSS SSSAVQFQYK NNNNNHHQAL HLQGAMGHDN NHQGHVGFGS SSLGVVNVLR NSKYAKAAQE LLEEFCSVGR GQFKKSKFNR
301: QNSNPNSNAG GGASPSSKDA PPPPPLSAAD RIEHQRRKVK LLSMLDEVDR RYNHYCEQMQ MVVNSFDLMM GFGAAVPYTA LAQKAMSRHF RCLKEAITAQ
401: LKQSCEVLGE KDGAGNSGGL TKGETPRLKM LEQSLRQQRA FHQMGMMEQE AWRPQRGLPE RSVNILRAWL FEHFLHPYPS DADKHLLARQ TGLSRNQVSN
501: WFINARVRLW KPMVEEMYQQ ELKEAESAED RENNNSNISG NQAQTPTTPS AATTSTATAP PPPPPTTTAT KPTGKRSDAI NAPDSDPSQH VAMNNRQGFS
601: ENQAKKSTAS TTATTTTAAA SEVAPPVSQC FDSDLPPHRL MASNDNTCRL VTADFGTASA SADIGSTLIR FGTTPGDVSL TLGLRHAGNM PSEKTPFSVR
701: EFGAI

Best Arabidopsis Sequence Match ( AT4G36870.1 )
(BLAST)

001: MGITKTSPNT TILLKTFHNN SMSQDYHHHH HHNQHQGGIF NFSNGFDRSD SPNLTTQQKQ EHQRVEMDEE SSVAGGRIPV YESAGMLSEM FNFPGSSGGG
101: RDLDLGQSFR SNRQLLEEQH QNIPAMNATD SATATAAAMQ LFLMNPPPPQ QPPSPSSTTS PRSHHNSSTL HMLLPSPSTN TTHHQNYTNH MSMHQLPHQH
201: HQQISTWQSS PDHHHHHHNS QTEIGTVHVE NSGGHGGQGL SLSLSSSLEA AAKAEEYRNI YYGANSSNAS PHHQYNQFKT LLANSSQHHH QVLNQFRSSP
301: AASSSSMAAV NILRNSRYTT AAQELLEEFC SVGRGFLKKN KLGNSSNPNT CGGDGGGSSP SSAGANKEHP PLSASDRIEH QRRKVKLLTM LEEVDRRYNH
401: YCEQMQMVVN SFDIVMGHGA ALPYTALAQK AMSRHFRCLK DAVAAQLKQS CELLGDKDAA GISSSGLTKG ETPRLRLLEQ SLRQNRAFHQ MGMMEQEAWR
501: PQRGLPERSV NILRAWLFEH FLHPYPSDAD KHLLARQTGL SRNQVSNWFI NARVRLWKPM VEEMYQQESK EREREEELEE NEEDQETKNS NDDKSTKSNN
601: NESNFTAVRT TSQTPTTTAP DASDADAAVA TGHRLRSNIN AYENDASSLL LPSSYSNAAA PAAVSDDLNS RYGGSDAFSA VATCQQSVGG FDDADMDGVN
701: VIRFGTNPTG DVSLTLGLRH AGNMPDKDAS FCVREFGGF

Arabidopsis Description

BLH2BEL1-like homeodomain protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW80]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.