CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26689	Soybean	nucleus	68.8	93.42
KRH25319	Soybean	nucleus	69.66	65.99
KRG88864	Soybean	nucleus	69.8	64.14
VIT_06s0009g00410.t01	Wine grape	nucleus	59.97	57.83
KRH72182	Soybean	nucleus	52.71	55.72
KRH32854	Soybean	nucleus	51.57	54.77
KRH68008	Soybean	nucleus	52.42	54.2
KRG96259	Soybean	nucleus	52.14	53.82
PGSC0003DMT400015183	Potato	nucleus	48.43	49.71
Solyc06g074120.2.1	Tomato	nucleus	49.15	49.36
PGSC0003DMT400050527	Potato	nucleus	48.58	48.3
Solyc11g068950.1.1	Tomato	nucleus	44.16	46.9
Os11t0158600-00	Rice	nucleus	27.21	45.48
TraesCS4B01G114600.1	Wheat	nucleus	40.6	43.05
TraesCS4D01G111900.1	Wheat	nucleus	40.6	42.92
TraesCS4A01G200800.1	Wheat	nucleus	40.46	42.77
Zm00001d053151_P003	Maize	nucleus	40.46	42.32
HORVU4Hr1G020710.1	Barley	nucleus	30.91	41.73
EES09309	Sorghum	nucleus	40.74	41.45
Os11t0158832-00	Rice	nucleus	13.68	36.5
KRH61118	Soybean	nucleus	22.51	35.91
KRH51793	Soybean	nucleus	22.36	35.12
KRH51485	Soybean	nucleus	27.64	34.89
AT2G27220.2	Thale cress	nucleus	21.94	34.3
Bra034335.1-P	Field mustard	nucleus	21.51	33.71
CDY30566	Canola	nucleus	21.51	33.71
CDX77099	Canola	nucleus	21.51	33.63
KRH60794	Soybean	nucleus	30.77	32.63
KRH05875	Soybean	nucleus	27.35	31.42
KRH15136	Soybean	nucleus	28.06	30.97
KRH51792	Soybean	nucleus	27.92	30.77
KRH61114	Soybean	nucleus	28.21	30.65
KRH77572	Soybean	nucleus	27.49	29.88
KRH27902	Soybean	nucleus	27.21	29.75
KRH28575	Soybean	nucleus	29.34	29.22
KRH59951	Soybean	nucleus	26.35	29.13
KRH00065	Soybean	nucleus	23.65	28.97
KRH76894	Soybean	nucleus	29.2	28.87
KRH75724	Soybean	nucleus	24.5	28.24
KRH41225	Soybean	nucleus	25.78	28.02
KRH69971	Soybean	nucleus	26.5	27.6
KRH65931	Soybean	nucleus	24.07	27.39
KRH08329	Soybean	nucleus	29.2	26.38
KRH52190	Soybean	nucleus	19.23	24.59
KRH25064	Soybean	nucleus	26.07	24.08
KRH30618	Soybean	nucleus	25.78	23.57
KRH61499	Soybean	nucleus	18.09	22.09
KRH05496	Soybean	nucleus	17.66	21.72
KRH26495	Soybean	nucleus	24.5	21.66
KRH22860	Soybean	nucleus	24.07	21.5

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100779075	MapMan:15.5.3.5	EMBL:ACUP02008423	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G312900
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	UniProt:I1M493
InterPro:IPR001356	EnsemblPlants:KRH22635	ProteinID:KRH22635	ProteinID:KRH22635.1	PFAM:PF05920	PFAM:PF07526
InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF196	SMART:SM00389	SMART:SM00574
SUPFAM:SSF46689	UniParc:UPI000233C097	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:40803230..40808367

Molecular Weight (calculated)

76082.1 Da

IEP (calculated)

7.769

GRAVY (calculated)

-0.581

Length

702 amino acids

Sequence
(BLAST)

001: MATYFNGSTS EIQPSADGGL QTLYLMNPTY VPYADAPHHP TTLLVNPNAP NLANIPHAPP VSPNQQHHHV IHGVTSIIGS GNSDDHSRPS LIGENIAAFH
101: GFSGGAGTAS TAAPRLHYNL WGPVVDQPGT PSSSSGGGGF RRPSQQGLSL SLSSQQTNFR SVSGELDVAG QGHVAGIGNS PMSASIGVSG VIMGSKYLKA
201: AQELLDEVVN VGKGIYKEEK FSEKVKANRE STNSGAAGDG GDGSSGGGEN SAGKQVVELS TAQRQELQMK KSKLVTMLDE VEQRYRQYHH QMQIVVSSFE
301: QAAGYGAAKS YTALALKTIS KQFRCLKDAI SAQIKATSKT LGEDDCLGVK VEGSRLRFVD HHLRQQRALQ QLGMIQPNAW RPQRGLPERA VSILRAWLFE
401: HFLHPYPKDS DKVMLAKQTG LARSQVSNWF INARVRLWKP MVEEMYLEEI KEHEQGNGSE NTKSKESSKE LASTANVALD HLQSKHESFN NQNTSPTEIS
501: TSSSMSPMGG SLQSHSGFHL AGSSDMQIRS PNKPRSSEMQ NSPSSILSVD MEMKHSGDHG NNRDANTKFG IERHHQQKDG YPLMTSNPNH GGGFGAFTME
601: DIGSRFNVTT EQLASRFHGN GVSLTLGLPH NENLSMSGTQ QHGFLSQNIH LGRRLEMGTN GNEFCTINTA PPSSHSGTTY ESIDIQNRKR FVAHQLLPDF
701: VA

Best Arabidopsis Sequence Match ( AT2G16400.1 )
(BLAST)

001: MATYYKTGSS EIYSRPEFVP GNAMNYTNSF TETFPRDSTN NVSPSKEIQV LSSLGGVSQM VEIQDSGSWR DQEDNDRNRF PVMRRLGLSS QIETSRGNNN
101: NEYATQVVSG FTRTIHNSKY LKAAQELLDE TVNVKKALKQ FQPEGDKINE VKEKNLQTNT AEIPQAERQE LQSKLSKLLS ILDEVDRNYK QYYHQMQIVV
201: SSFDVIAGCG AAKPYTALAL QTISRHFRCL RDAISGQILV IRKSLGGEQD GSDGRGVGIS RLRNVDQQVR QQRALQRLGV MQPHTWRPQR GLPDSSVLVL
301: RAWLFEHFLH PYPKDSDKIM LARQTGLSRG QVSNWFINAR VRLWKPMVEE MYKEEFTDAL QENDPNQSSE NTPEITEIQE LQTESSSNNG HVPGVASSSM
401: RQNTVAHGGD RFMMVTDMTR NGNGGMSLTL GIQNSDARGD VPMSGGIDNY KNTISGTDLQ YLNSRNHQHQ IGSSQLLHDF VA

Arabidopsis Description

BLH7BEL1-like homeodomain protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIW1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.