CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28575	Soybean	nucleus	94.23	94.89
Bra032147.1-P	Field mustard	nucleus	29.3	65.0
GSMUA_Achr5P08840_001	Banana	nucleus	28.45	63.72
KRH08329	Soybean	nucleus	69.44	63.45
KRH69971	Soybean	nucleus	59.3	62.46
GSMUA_Achr4P14670_001	Banana	nucleus	25.77	61.62
VIT_04s0023g01020.t01	Wine grape	nucleus	72.11	60.52
GSMUA_Achr4P07450_001	Banana	nucleus	25.77	60.4
Solyc02g089940.2.1	Tomato	nucleus	60.28	58.95
GSMUA_Achr1P26900_001	Banana	nucleus	32.96	58.79
PGSC0003DMT400026172	Potato	nucleus	60.42	58.13
CDX76849	Canola	nucleus	47.18	55.74
CDY46061	Canola	nucleus	47.32	55.26
Bra039212.1-P	Field mustard	nucleus	47.04	54.93
CDY39669	Canola	nucleus	47.46	52.25
CDY62523	Canola	nucleus	47.61	52.16
GSMUA_Achr7P27440_001	Banana	nucleus	48.73	50.58
AT2G23760.4	Thale cress	nucleus	48.03	50.22
TraesCS4B01G063100.1	Wheat	nucleus, plastid	47.61	45.61
Zm00001d033898_P002	Maize	nucleus	48.17	45.3
EER93512	Sorghum	nucleus, plastid	48.87	45.06
TraesCS4A01G252100.2	Wheat	nucleus	48.45	44.62
Os03t0732100-01	Rice	nucleus	48.45	43.54
TraesCS4D01G062100.1	Wheat	nucleus	48.59	42.96
HORVU4Hr1G010430.6	Barley	nucleus	48.03	42.15
KRH26689	Soybean	nucleus	24.93	34.24
KRH27902	Soybean	nucleus	30.56	33.8
KRH77572	Soybean	nucleus	30.7	33.75
KRH59951	Soybean	nucleus	30.0	33.54
KRH41225	Soybean	nucleus	30.0	32.97
KRH61118	Soybean	nucleus	20.0	32.27
KRH51793	Soybean	nucleus	19.58	31.1
KRH51485	Soybean	nucleus	23.66	30.22
KRH75724	Soybean	nucleus	25.92	30.21
KRH00065	Soybean	nucleus	24.23	30.02
KRH72182	Soybean	nucleus	27.75	29.67
KRH32854	Soybean	nucleus	27.61	29.65
KRH05875	Soybean	nucleus	25.49	29.62
KRH65931	Soybean	nucleus	25.49	29.34
KRH22635	Soybean	nucleus	28.87	29.2
KRH15136	Soybean	nucleus	25.35	28.3
KRH68008	Soybean	nucleus	26.48	27.69
KRG96259	Soybean	nucleus	26.48	27.65
KRH51792	Soybean	nucleus	24.65	27.47
KRH60794	Soybean	nucleus	25.49	27.34
KRH61114	Soybean	nucleus	24.79	27.24
KRH25319	Soybean	nucleus	27.18	26.05
KRH30618	Soybean	nucleus	27.04	25.0
KRG88864	Soybean	nucleus	26.9	25.0
KRH25064	Soybean	nucleus	26.48	24.74
KRH22860	Soybean	nucleus	26.62	24.05
KRH26495	Soybean	nucleus	26.62	23.8
KRH52190	Soybean	nucleus	15.77	20.4
KRH05496	Soybean	nucleus	15.07	18.74
KRH61499	Soybean	nucleus	14.93	18.43

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100786231	MapMan:15.5.3.5	EMBL:ACUP02000645	ncoils:Coil	EnsemblPlantsGene:GLYMA_01G179900
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	UniProt:I1J907
InterPro:IPR001356	EnsemblPlants:KRH76894	ProteinID:KRH76894	ProteinID:KRH76894.1	ProteinID:KRH76895.1	PFAM:PF05920
PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF136	SMART:SM00389
SMART:SM00574	SUPFAM:SSF46689	UniParc:UPI000294BF77	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:51599510..51606968

Molecular Weight (calculated)

77147.2 Da

IEP (calculated)

7.267

GRAVY (calculated)

-0.646

Length

710 amino acids

Sequence
(BLAST)

001: MSQDFQQGIF SFPNGLERGR VMSPQQQIRR DKVRFEAAPL VGIEEEEPVY ETAGMLSEMF NFPPATELLE QQHATATFRA ARQAGEWYGN RQQQQQQISG
101: INADSAAAMQ LFLMNPQTRS PSPPQSHTTP SSTLHMLLPN PSSNSLQGFT GSAAGGSFGQ FTWVPEGAHQ QGGVVEGQGL SLSLSSSLEA AKAEELRMGD
201: SGFLYYNHQQ GGGGGGGGGG PSSSSSAVQF QYKNNNSHHH QALHLQGAMG HDNNHQGHVG FGSSSLGVVN VLRNSKYVKA AQELLEEFCS VGRGQFKKSK
301: FNRQNSNPNS NPGGGGSSPS SKDAPPPPPP LSAADRIEHQ RRKVKLLSML DEVDRRYNHY CEQMQMVVNS FDLMMGFGAA VPYTALAQKA MSRHFRCLKE
401: AITAQLKQSC EVLGDKDGAG SSGGLTKGET PRLKMLEQSL RQQRAFHQMG MMEQEAWRPQ RGLPERSVNI LRAWLFEHFL HPYPSDADKH LLARQTGLSR
501: NQVSNWFINA RVRLWKPMVE EMYQQELKEA ESAEEREKDQ SNNISGNQAQ IPTTPSAATT STATATAPPP PPSTTTKTTK PTGKRSDTIN APESDPSQHL
601: AMNNRQGFSE NQAKKSTAST TTTTIASEVA PPVSQCFDDS DLPAHRLMAS DDTCHLVTAD FGTASASADI GSTLIRFGTT PGDVSLTLGL RHAGNMPEKS
701: PFSVRDFGAI

Best Arabidopsis Sequence Match ( AT4G36870.1 )
(BLAST)

001: MGITKTSPNT TILLKTFHNN SMSQDYHHHH HHNQHQGGIF NFSNGFDRSD SPNLTTQQKQ EHQRVEMDEE SSVAGGRIPV YESAGMLSEM FNFPGSSGGG
101: RDLDLGQSFR SNRQLLEEQH QNIPAMNATD SATATAAAMQ LFLMNPPPPQ QPPSPSSTTS PRSHHNSSTL HMLLPSPSTN TTHHQNYTNH MSMHQLPHQH
201: HQQISTWQSS PDHHHHHHNS QTEIGTVHVE NSGGHGGQGL SLSLSSSLEA AAKAEEYRNI YYGANSSNAS PHHQYNQFKT LLANSSQHHH QVLNQFRSSP
301: AASSSSMAAV NILRNSRYTT AAQELLEEFC SVGRGFLKKN KLGNSSNPNT CGGDGGGSSP SSAGANKEHP PLSASDRIEH QRRKVKLLTM LEEVDRRYNH
401: YCEQMQMVVN SFDIVMGHGA ALPYTALAQK AMSRHFRCLK DAVAAQLKQS CELLGDKDAA GISSSGLTKG ETPRLRLLEQ SLRQNRAFHQ MGMMEQEAWR
501: PQRGLPERSV NILRAWLFEH FLHPYPSDAD KHLLARQTGL SRNQVSNWFI NARVRLWKPM VEEMYQQESK EREREEELEE NEEDQETKNS NDDKSTKSNN
601: NESNFTAVRT TSQTPTTTAP DASDADAAVA TGHRLRSNIN AYENDASSLL LPSSYSNAAA PAAVSDDLNS RYGGSDAFSA VATCQQSVGG FDDADMDGVN
701: VIRFGTNPTG DVSLTLGLRH AGNMPDKDAS FCVREFGGF

Arabidopsis Description

BLH2BEL1-like homeodomain protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW80]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.