Factsheet for PGSC0003DMT400026172

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g089940.2.1	Tomato	nucleus	94.58	96.14
PGSC0003DMT400056612	Potato	nucleus	27.1	67.8
Bra032147.1-P	Field mustard	nucleus	26.69	61.56
KRH28575	Soybean	nucleus	58.13	60.85
KRH76894	Soybean	nucleus	58.13	60.42
GSMUA_Achr5P08840_001	Banana	nucleus	25.47	59.31
GSMUA_Achr4P14670_001	Banana	nucleus	23.31	57.91
KRH69971	Soybean	nucleus	52.3	57.27
VIT_04s0023g01020.t01	Wine grape	nucleus	65.45	57.09
GSMUA_Achr4P07450_001	Banana	nucleus	23.31	56.77
GSMUA_Achr1P26900_001	Banana	nucleus	30.49	56.53
KRH08329	Soybean	nucleus	58.94	55.98
CDX76849	Canola	nucleus	43.5	53.41
CDY46061	Canola	nucleus	43.5	52.8
Bra039212.1-P	Field mustard	nucleus	43.22	52.47
CDY39669	Canola	nucleus	44.99	51.47
CDY62523	Canola	nucleus	44.85	51.08
GSMUA_Achr7P27440_001	Banana	nucleus	46.21	49.85
AT2G23760.4	Thale cress	nucleus	44.85	48.75
TraesCS4B01G063100.1	Wheat	nucleus, plastid	46.21	46.02
EER93512	Sorghum	nucleus, plastid	47.02	45.06
Zm00001d033898_P002	Maize	nucleus	45.94	44.9
TraesCS4A01G252100.2	Wheat	nucleus	46.34	44.36
Os03t0732100-01	Rice	nucleus	47.29	44.18
TraesCS4D01G062100.1	Wheat	nucleus	46.34	42.59
HORVU4Hr1G010430.6	Barley	nucleus	45.8	41.78
PGSC0003DMT400032122	Potato	nucleus	27.78	32.39
PGSC0003DMT400062353	Potato	nucleus	21.82	31.88
PGSC0003DMT400009609	Potato	nucleus	17.34	30.26
PGSC0003DMT400049235	Potato	nucleus	22.76	29.22
PGSC0003DMT400079517	Potato	nucleus	24.53	28.06
PGSC0003DMT400015183	Potato	nucleus	24.8	26.75
PGSC0003DMT400054945	Potato	nucleus	25.07	26.28
PGSC0003DMT400050527	Potato	nucleus	25.07	26.2
PGSC0003DMT400009610	Potato	nucleus	22.63	25.26
PGSC0003DMT400020825	Potato	nucleus	22.9	24.42
PGSC0003DMT400076995	Potato	nucleus	14.5	19.81

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102577475	MapMan:15.5.3.5	ProteinID:AAN03623	ProteinID:AAN03623.1	EMBL:AF406699
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom
InterPro:IPR001356	UniProt:M1AMS7	PFAM:PF05920	PFAM:PF07526	EnsemblPlantsGene:PGSC0003DMG400010086	PGSC:PGSC0003DMG400010086
EnsemblPlants:PGSC0003DMT400026172	InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF136	SMART:SM00389
SMART:SM00574	SUPFAM:SSF46689	UniParc:UPI000295C8A1	RefSeq:XP_006338267.1	RefSeq:XP_006338268.1	SEG:seg

Description

BIPINNATA [Source:PGSC_GENE;Acc:PGSC0003DMG400010086]

Coordinates

chr2:-:44768327..44775465

Molecular Weight (calculated)

80711.3 Da

IEP (calculated)

7.248

GRAVY (calculated)

-0.652

Length

738 amino acids

Sequence
(BLAST)

001: MGIATQPITS RPCHKYPVIH QVAENLNSMS QDYHHHSLFS FPNGFERSQA EQQHQQQQQQ HQQHMAAQQI RRDKLRVQGF EPFEEETSTV YETAGMLSEM
101: FNFPPGTTAT NAAELLETQF NPNFRQPNPR PQQIHAAAMG NEWFGNHRQG MVVGGGASSQ QLGYAKNHTP NAAESMQLFL MNPQPRSPSP SPPNSTSSTL
201: HMLLPNPSST STLQGFPNPA EGSFGQFMTW GNGGASAATA THHLNAQNEI GGVNVVESQG LSLSLSSSLQ HKAEELQMSG EAGGMLFFNQ GGSSTSGQYR
301: YKNLNMGGSG VSPNIHQVHV GYGSSLGVVN VLRNSKYAKA AQELLEEFCS VGRGKLKKNN NKAAANNPNT NPSGANNEAS SKDVPTLSAA DRIEHQRRKV
401: KLLSMLDEVD RRYNHYCEQM QMVVNSFDLV MGFGAAVPYT ALAQKAMSRH FRCLKDAIGA QLKQCCELLG EKDAGTSGLT KGETPRLKML EQSLRQQRAF
501: HQMGMMEQEA WRPQRGLPER SVNILRAWLF EHFLHPYPSD ADKHLLARQT GLSRNQVSNW FINARVRLWK PMVEDMYQQE AKDGDGDGDE KSQSQNSGNN
601: IIAQTPTPNS LTNSSSTNMT TTTTTAPTTT TALAAAETGT AATPITVTSS KRSQINATDS DPSLVAINSF SENQATFPTN IHDPDACRRG NFSGDDGTTT
701: HDHMGSTMIR FGTTAGDVSL TLGLRHAGNL PENTHFFG

Best Arabidopsis Sequence Match ( AT4G36870.1 )
(BLAST)

001: MGITKTSPNT TILLKTFHNN SMSQDYHHHH HHNQHQGGIF NFSNGFDRSD SPNLTTQQKQ EHQRVEMDEE SSVAGGRIPV YESAGMLSEM FNFPGSSGGG
101: RDLDLGQSFR SNRQLLEEQH QNIPAMNATD SATATAAAMQ LFLMNPPPPQ QPPSPSSTTS PRSHHNSSTL HMLLPSPSTN TTHHQNYTNH MSMHQLPHQH
201: HQQISTWQSS PDHHHHHHNS QTEIGTVHVE NSGGHGGQGL SLSLSSSLEA AAKAEEYRNI YYGANSSNAS PHHQYNQFKT LLANSSQHHH QVLNQFRSSP
301: AASSSSMAAV NILRNSRYTT AAQELLEEFC SVGRGFLKKN KLGNSSNPNT CGGDGGGSSP SSAGANKEHP PLSASDRIEH QRRKVKLLTM LEEVDRRYNH
401: YCEQMQMVVN SFDIVMGHGA ALPYTALAQK AMSRHFRCLK DAVAAQLKQS CELLGDKDAA GISSSGLTKG ETPRLRLLEQ SLRQNRAFHQ MGMMEQEAWR
501: PQRGLPERSV NILRAWLFEH FLHPYPSDAD KHLLARQTGL SRNQVSNWFI NARVRLWKPM VEEMYQQESK EREREEELEE NEEDQETKNS NDDKSTKSNN
601: NESNFTAVRT TSQTPTTTAP DASDADAAVA TGHRLRSNIN AYENDASSLL LPSSYSNAAA PAAVSDDLNS RYGGSDAFSA VATCQQSVGG FDDADMDGVN
701: VIRFGTNPTG DVSLTLGLRH AGNMPDKDAS FCVREFGGF

Arabidopsis Description

BLH2BEL1-like homeodomain protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW80]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.