Factsheet for PGSC0003DMT400076995

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400040351
PGSC0003DMT400043083
PGSC0003DMT400058528

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32980.1	PGSC0003DMT400043083	AT1G62360.1	15781858
AT4G32980.1	PGSC0003DMT400043083	AT1G62360.1	16513846
AT4G32980.1	PGSC0003DMT400043083	AT1G62360.1	17785527
AT4G32980.1	PGSC0003DMT400058528	AT1G62990.1	15781858
AT4G32980.1	PGSC0003DMT400040351	AT5G11060.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g065420.2.1	Tomato	nucleus	93.15	89.98
CDX75307	Canola	nucleus	25.0	60.81
VIT_04s0008g00880.t01	Wine grape	nucleus	52.96	48.56
KRH52190	Soybean	nucleus	43.33	42.62
KRH61499	Soybean	nucleus	44.81	42.09
KRH05496	Soybean	nucleus	43.89	41.51
CDY13511	Canola	nucleus	32.22	39.82
Bra037031.1-P	Field mustard	nucleus	32.04	39.59
AT4G32980.1	Thale cress	nucleus	34.63	39.53
CDX68927	Canola	nucleus	33.7	39.48
Bra011403.1-P	Field mustard	nucleus	33.89	39.27
CDX75313	Canola	nucleus	33.7	39.06
CDX68925	Canola	cytosol	12.96	38.67
CDX72383	Canola	nucleus	31.85	38.05
GSMUA_Achr4P02680_001	Banana	nucleus	32.78	30.57
Zm00001d046223_P006	Maize	nucleus	25.37	27.9
KXG20197	Sorghum	nucleus	25.37	27.73
TraesCS7A01G358300.1	Wheat	nucleus	27.22	26.58
TraesCS7D01G364500.1	Wheat	nucleus	26.48	26.0
TraesCS7B01G269400.1	Wheat	nucleus	26.48	25.91
Zm00001d016298_P001	Maize	nucleus	25.74	25.36
Os02t0226600-01	Rice	nucleus	25.19	25.23
EES04785	Sorghum	nucleus	26.11	25.0
Zm00001d002249_P001	Maize	nucleus	15.56	23.86
Os06t0562300-00	Rice	nucleus	23.33	23.12
HORVU7Hr1G088090.4	Barley	nucleus	23.7	23.1
CDX68906	Canola	nucleus	10.93	22.78
PGSC0003DMT400056612	Potato	nucleus	11.85	21.69
PGSC0003DMT400009609	Potato	nucleus	16.3	20.8
PGSC0003DMT400062353	Potato	nucleus	17.59	18.81
PGSC0003DMT400032122	Potato	nucleus	21.11	18.01
PGSC0003DMT400079517	Potato	nucleus	20.74	17.36
PGSC0003DMT400015183	Potato	nucleus	20.93	16.52
PGSC0003DMT400009610	Potato	nucleus	20.19	16.49
PGSC0003DMT400050527	Potato	nucleus	20.93	16.01
PGSC0003DMT400049235	Potato	nucleus	16.67	15.65
PGSC0003DMT400054945	Potato	nucleus	20.19	15.48
PGSC0003DMT400020825	Potato	nucleus	19.63	15.32
PGSC0003DMT400026172	Potato	nucleus	19.81	14.5

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0006629	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008285
GO:GO:0009058	GO:GO:0009628	GO:GO:0009640	GO:GO:0009653	GO:GO:0009791	GO:GO:0009838
GO:GO:0009908	GO:GO:0009987	GO:GO:0010227	GO:GO:0010228	GO:GO:0010371	GO:GO:0019748
GO:GO:0043565	GO:GO:0090470	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356
UniProt:M1CXR7	PFAM:PF05920	PFAM:PF07526	EnsemblPlantsGene:PGSC0003DMG400029946	PGSC:PGSC0003DMG400029946	EnsemblPlants:PGSC0003DMT400076995
InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF92	SMART:SM00389	SMART:SM00574
SUPFAM:SSF46689	UniParc:UPI0002964C10	SEG:seg	:	:	:

Description

Bell-like homeodomain protein 4 [Source:PGSC_GENE;Acc:PGSC0003DMG400029946]

Coordinates

chr8:+:36361500..36364158

Molecular Weight (calculated)

60603.3 Da

IEP (calculated)

6.958

GRAVY (calculated)

-0.467

Length

540 amino acids

Sequence
(BLAST)

001: MDGQNHIVDG HGIPYPFMLQ GEAVNSSHGF LNVPNFPRSV DTEAIHNVLP AGRSRIKEFT VSTSYPISNA YTEDQYMEGI PISAVSLANL LAARNAMHEN
101: PENLAVLAQL SHPAEGQKID GLDYPNVLNH SFGSYRNYEF DGVSEIAGTV VGRAGSQPFQ LTENVNSNTW FSSETASLSS DSPSGSSRFS NELCLSLTTS
201: QSAVACGTTI RDQCSDISCS GVTNQAFPQR RFDSELTSCN SRNLSLNFGS YKPVHLSQFL TGSRYLRVMQ EILSEIAQLS LQNHNLIGYR GNGMENGANT
301: SFALNSDAGR GYAAMSSDDS PDGDHRIIGL MDCEAKKKNL VALLQVVDDQ YNQCLDEIHM VISAFHAVTE LDPSIHARFA LQTISSLYKN LRERISNYIL
401: AMGEHFNNRG ERGVEKSFET SFIQKQWALQ QLKRKDHQLW RPQRGLPERS VSVLRAWMFQ NFLHPYPKDA EKQLLAVKSG LTRSQVSNWF INARVRLWKP
501: MIEEMYAEMN RRKIRAGNED EANHHRRNHK IIESHLFTMK

Best Arabidopsis Sequence Match ( AT4G32980.1 )
(BLAST)

001: MDNNNNNNTF SSLDNVMTNQ NPLLMDFIPS REDSTSFSTM LPWNTIRSDP LQMGGFDIFN SMLTNKYLSS SPRSIDVQDN RNVEFMAPPP HPPPLHPLDH
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK

Arabidopsis Description

ATH1Homeobox protein ATH1 [Source:UniProtKB/Swiss-Prot;Acc:P48731]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.