Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037031.1-P | Field mustard | nucleus | 98.63 | 98.63 |
| CDX72383 | Canola | nucleus | 91.99 | 88.94 |
| CDX75307 | Canola | nucleus | 43.71 | 86.04 |
| CDX68927 | Canola | nucleus | 83.3 | 78.96 |
| CDX75313 | Canola | nucleus | 82.84 | 77.68 |
| AT4G32980.1 | Thale cress | nucleus | 78.03 | 72.09 |
| CDX68906 | Canola | nucleus | 40.73 | 68.73 |
| CDX68925 | Canola | cytosol | 23.57 | 56.91 |
| KRH52190 | Soybean | nucleus | 42.79 | 34.06 |
| VIT_04s0008g00880.t01 | Wine grape | nucleus | 45.77 | 33.96 |
| CDX83753 | Canola | nucleus | 14.65 | 33.68 |
| KRH05496 | Soybean | nucleus | 43.71 | 33.45 |
| CDY21826 | Canola | extracellular, plastid | 7.32 | 33.33 |
| KRH61499 | Soybean | nucleus | 43.48 | 33.04 |
| PGSC0003DMT400076995 | Potato | nucleus | 39.82 | 32.22 |
| Solyc08g065420.2.1 | Tomato | nucleus | 40.5 | 31.66 |
| CDX73171 | Canola | nucleus | 18.31 | 27.68 |
| CDY47523 | Canola | nucleus | 18.31 | 27.68 |
| GSMUA_Achr4P02680_001 | Banana | nucleus | 34.78 | 26.25 |
| CDY45383 | Canola | nucleus | 13.96 | 23.19 |
| CDY29411 | Canola | nucleus | 20.37 | 22.88 |
| Zm00001d046223_P006 | Maize | nucleus | 25.17 | 22.4 |
| TraesCS7B01G269400.1 | Wheat | nucleus | 27.92 | 22.1 |
| TraesCS7A01G358300.1 | Wheat | nucleus | 27.92 | 22.06 |
| TraesCS7D01G364500.1 | Wheat | nucleus | 27.69 | 22.0 |
| Os02t0226600-01 | Rice | nucleus | 26.77 | 21.71 |
| KXG20197 | Sorghum | nucleus | 24.26 | 21.46 |
| CDY46209 | Canola | nucleus | 18.54 | 21.43 |
| CDY02261 | Canola | nucleus | 21.97 | 21.38 |
| CDX89711 | Canola | nucleus | 21.97 | 21.1 |
| Zm00001d016298_P001 | Maize | nucleus | 26.32 | 20.99 |
| Os06t0562300-00 | Rice | nucleus | 25.63 | 20.55 |
| CDX77099 | Canola | nucleus | 20.59 | 20.04 |
| CDY30566 | Canola | nucleus | 20.37 | 19.87 |
| EES04785 | Sorghum | nucleus | 25.63 | 19.86 |
| CDY52073 | Canola | nucleus | 20.82 | 19.32 |
| CDY39031 | Canola | nucleus | 20.82 | 19.04 |
| HORVU7Hr1G088090.4 | Barley | nucleus | 24.03 | 18.95 |
| CDX68129 | Canola | nucleus | 20.37 | 18.82 |
| Zm00001d002249_P001 | Maize | nucleus | 14.87 | 18.47 |
| CDX96653 | Canola | nucleus | 21.28 | 18.38 |
| CDX73170 | Canola | nucleus | 21.28 | 18.09 |
| CDY63699 | Canola | nucleus | 17.16 | 17.94 |
| CDY47524 | Canola | nucleus | 21.05 | 17.83 |
| CDX85896 | Canola | nucleus | 20.37 | 17.69 |
| CDX84171 | Canola | nucleus | 23.8 | 17.69 |
| CDY32069 | Canola | nucleus | 25.63 | 17.61 |
| CDY40420 | Canola | nucleus | 25.4 | 17.56 |
| CDY39359 | Canola | nucleus | 19.91 | 16.76 |
| CDX71279 | Canola | nucleus | 14.87 | 16.75 |
| CDX75085 | Canola | nucleus | 24.03 | 16.72 |
| CDX84585 | Canola | nucleus | 25.63 | 16.69 |
| CDX79646 | Canola | nucleus | 25.86 | 16.35 |
| CDY44476 | Canola | nucleus | 21.05 | 16.2 |
| CDX76849 | Canola | nucleus | 22.2 | 16.14 |
| CDY46061 | Canola | nucleus | 22.43 | 16.12 |
| CDY62523 | Canola | nucleus | 22.43 | 15.12 |
| CDY39669 | Canola | nucleus | 22.2 | 15.04 |
| CDY24765 | Canola | nucleus | 22.2 | 14.54 |
| CDX75604 | Canola | nucleus | 22.2 | 14.5 |
| CDY22463 | Canola | nucleus | 22.2 | 14.48 |
| CDX69252 | Canola | nucleus | 21.74 | 14.24 |
| CDY45321 | Canola | nucleus, plastid | 22.2 | 14.16 |
| CDY69132 | Canola | nucleus | 18.31 | 13.94 |
| CDY48107 | Canola | nucleus | 18.08 | 13.74 |
| CDY10473 | Canola | nucleus | 17.85 | 13.57 |
| CDY40327 | Canola | nucleus | 17.85 | 13.49 |
| CDY55113 | Canola | nucleus | 13.5 | 11.28 |
| CDX80798 | Canola | nucleus | 13.5 | 11.09 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.5 | GO:A0A078FK49 | UniProt:A0A078FK49 | EnsemblPlants:CDY13511 | ProteinID:CDY13511 |
| ProteinID:CDY13511.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00077826001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_KN_domain |
| InterPro:Homeobox_dom | InterPro:IPR001356 | PFAM:PF05920 | PFAM:PF07526 | InterPro:POX_dom | PFscan:PS50071 |
| PANTHER:PTHR11850 | PANTHER:PTHR11850:SF92 | SMART:SM00389 | SMART:SM00574 | SUPFAM:SSF46689 | UniParc:UPI0004EE7103 |
| SEG:seg | : | : | : | : | : |
Description
BnaA03g52290DBnaA03g52290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FK49]
Coordinates
chrLK032035:-:777434..779033
Molecular Weight (calculated)
50004.0 Da
IEP (calculated)
6.797
GRAVY (calculated)
-0.575
Length
437 amino acids
Sequence
(BLAST)
(BLAST)
001: MENDNTFSSL DNVMTNQNNL LMDLIPSRED STSFSSMLPW NFMRPDPLQM GGFDIFNSFL TNKYLSSTSS SINVQESFEV MAPPPLPPFH HLDHLRPYDD
101: SSNNMWSFGE NSGFHPYSCV EGVEGPSEPI ASTFAEEDVS DECSEINPYG ATKMTSEQAS SSSKDISNNV AHVIFGSKYL HSVQEILSHF ATYSLNNLEN
201: HPQCYFSSQG TESGAADSAF TAFLEGGFDQ RRALETKKRN LLNLLQMVDD RYSHCVDEIH TVVSAFHAAT ELDPQLHTRF ALQTISFLYK NLRERISKKI
301: LMMGSVLERG KEKSQENSII HQHCLLQQLK HKNHQIWRPQ RGLPEKSVSV LRTWMFQNFL HPYPTDSEKH LLAIRSGLTR SQVSNWFINA RVRLWKPMIE
401: EMYAEMNKRK LKNTQLQGNG GSRRIPKSIM MTQERNK
101: SSNNMWSFGE NSGFHPYSCV EGVEGPSEPI ASTFAEEDVS DECSEINPYG ATKMTSEQAS SSSKDISNNV AHVIFGSKYL HSVQEILSHF ATYSLNNLEN
201: HPQCYFSSQG TESGAADSAF TAFLEGGFDQ RRALETKKRN LLNLLQMVDD RYSHCVDEIH TVVSAFHAAT ELDPQLHTRF ALQTISFLYK NLRERISKKI
301: LMMGSVLERG KEKSQENSII HQHCLLQQLK HKNHQIWRPQ RGLPEKSVSV LRTWMFQNFL HPYPTDSEKH LLAIRSGLTR SQVSNWFINA RVRLWKPMIE
401: EMYAEMNKRK LKNTQLQGNG GSRRIPKSIM MTQERNK
001: MDNNNNNNTF SSLDNVMTNQ NPLLMDFIPS REDSTSFSTM LPWNTIRSDP LQMGGFDIFN SMLTNKYLSS SPRSIDVQDN RNVEFMAPPP HPPPLHPLDH
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK
Arabidopsis Description
ATH1Homeobox protein ATH1 [Source:UniProtKB/Swiss-Prot;Acc:P48731]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.