CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX78407
CDX93852
CDY04827
CDY12943
CDY19545
CDY45968
CDY64892
CDY66559

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32980.1	CDY12943	AT1G62360.1	15781858
AT4G32980.1	CDY19545	AT1G62360.1	15781858
AT4G32980.1	CDY12943	AT1G62360.1	16513846
AT4G32980.1	CDY19545	AT1G62360.1	16513846
AT4G32980.1	CDY12943	AT1G62360.1	17785527
AT4G32980.1	CDY19545	AT1G62360.1	17785527
AT4G32980.1	CDX93852	AT1G62990.1	15781858
AT4G32980.1	CDY45968	AT1G62990.1	15781858
AT4G32980.1	CDY64892	AT1G62990.1	15781858
AT4G32980.1	CDY66559	AT1G62990.1	15781858
AT4G32980.1	CDY04827	AT5G01840.1	15781858
AT4G32980.1	CDX78407	AT5G11060.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68925	Canola	cytosol	50.45	61.88
Bra011403.1-P	Field mustard	nucleus	97.75	46.57
CDX75313	Canola	nucleus	97.3	46.35
CDX68927	Canola	nucleus	94.59	45.55
CDY13511	Canola	nucleus	86.04	43.71
CDX72383	Canola	nucleus	86.49	42.48
AT4G32980.1	Thale cress	nucleus	84.68	39.75
CDX83753	Canola	nucleus	29.28	34.21
CDY21826	Canola	extracellular, plastid	14.41	33.33
CDX73171	Canola	nucleus	33.78	25.95
CDY47523	Canola	nucleus	33.78	25.95
PGSC0003DMT400076995	Potato	nucleus	60.81	25.0
KRH52190	Soybean	nucleus	61.26	24.77
Solyc08g065420.2.1	Tomato	nucleus	60.81	24.15
KRH05496	Soybean	nucleus	61.26	23.82
VIT_04s0008g00880.t01	Wine grape	nucleus	63.06	23.77
KRH61499	Soybean	nucleus	61.26	23.65
CDY45383	Canola	nucleus	26.58	22.43
CDY29411	Canola	nucleus	37.84	21.59
CDY46209	Canola	nucleus	31.98	18.78
CDY02261	Canola	nucleus	37.84	18.71
GSMUA_Achr4P02680_001	Banana	nucleus	48.65	18.65
CDX89711	Canola	nucleus	37.84	18.46
KXG20197	Sorghum	nucleus	40.54	18.22
Zm00001d046223_P006	Maize	nucleus	40.09	18.13
CDY52073	Canola	nucleus	37.39	17.62
CDX77099	Canola	nucleus	35.14	17.37
CDY39031	Canola	nucleus	37.39	17.36
CDX68129	Canola	nucleus	36.94	17.34
Os02t0226600-01	Rice	nucleus	41.89	17.25
CDY30566	Canola	nucleus	34.68	17.19
Zm00001d002249_P001	Maize	nucleus	27.03	17.05
Zm00001d016298_P001	Maize	nucleus	41.89	16.97
TraesCS7D01G364500.1	Wheat	nucleus	41.89	16.91
TraesCS7B01G269400.1	Wheat	nucleus	41.89	16.85
TraesCS7A01G358300.1	Wheat	nucleus	41.89	16.82
CDX96653	Canola	nucleus	38.29	16.8
CDX73170	Canola	nucleus	38.29	16.54
EES04785	Sorghum	nucleus	41.89	16.49
CDY47524	Canola	nucleus	37.84	16.28
CDY63699	Canola	nucleus	30.63	16.27
Os06t0562300-00	Rice	nucleus	39.64	16.15
CDX85896	Canola	nucleus	36.49	16.1
CDY39359	Canola	nucleus	36.49	15.61
CDX71279	Canola	nucleus	25.23	14.43
HORVU7Hr1G088090.4	Barley	nucleus	35.59	14.26
CDY32069	Canola	nucleus	40.54	14.15
CDX84171	Canola	nucleus	37.39	14.12
CDY40420	Canola	nucleus	40.09	14.08
CDX84585	Canola	nucleus	41.44	13.71
CDX75085	Canola	nucleus	37.39	13.22
CDY44476	Canola	nucleus	33.78	13.2
CDX79646	Canola	nucleus	40.99	13.17
CDY45321	Canola	nucleus, plastid	39.19	12.7
CDY46061	Canola	nucleus	33.33	12.17
CDX76849	Canola	nucleus	32.88	12.15
CDY39669	Canola	nucleus	33.33	11.47
CDY62523	Canola	nucleus	33.33	11.42
CDY24765	Canola	nucleus	33.78	11.24
CDX69252	Canola	nucleus	33.78	11.24
CDX75604	Canola	nucleus	33.78	11.21
CDY22463	Canola	nucleus	33.78	11.19
CDY69132	Canola	nucleus	28.83	11.15
CDY48107	Canola	nucleus	28.38	10.96
CDY10473	Canola	nucleus	27.93	10.78
CDY40327	Canola	nucleus	27.93	10.73
CDX68906	Canola	nucleus	12.16	10.42
CDX80798	Canola	nucleus	20.27	8.46
CDY55113	Canola	nucleus	19.82	8.41

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	GO:A0A078CEQ7	EnsemblPlants:CDX75307	ProteinID:CDX75307	ProteinID:CDX75307.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00121181001
InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	PFAM:PF05920	PFAM:PF07526
InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF92	SMART:SM00389	SMART:SM00574
SUPFAM:SSF46689	UniParc:UPI0004EE62AB	:	:	:	:

Description

BnaA01g03950D

Coordinates

chrLK031804:-:603962..604978

Molecular Weight (calculated)

26171.0 Da

IEP (calculated)

10.783

GRAVY (calculated)

-0.544

Length

222 amino acids

Sequence
(BLAST)

001: MLLFFSRNRV RGALEAKKTH LLDLLQMVDD RYSHCVDEIH TVVSAFHAAT ELDPQLHTRF ALQTVSFLYK NLRERISKKI LMMGTVLERG KEKSQEDSIF
101: HQHCLLQQLK RKNHQIWRPQ RGLPEKSVSV LRTWMFQNFL HPYPKDSEKH LLAIRSGLTR SQVSNWFINA RVRLWKPMIE DMYAEMNKRK LSNTPLQGGN
201: GGSFIRVPKS VMMSQERDKI RE

Best Arabidopsis Sequence Match ( AT4G32980.1 )
(BLAST)

001: MDNNNNNNTF SSLDNVMTNQ NPLLMDFIPS REDSTSFSTM LPWNTIRSDP LQMGGFDIFN SMLTNKYLSS SPRSIDVQDN RNVEFMAPPP HPPPLHPLDH
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK

Arabidopsis Description

ATH1Homeobox protein ATH1 [Source:UniProtKB/Swiss-Prot;Acc:P48731]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.