CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68129	Canola	nucleus	87.08	92.6
CDY52073	Canola	nucleus	74.75	79.83
CDY39031	Canola	nucleus	75.35	79.29
CDX83753	Canola	nucleus	29.62	78.42
CDX73170	Canola	nucleus	79.32	77.63
CDY47524	Canola	nucleus	79.52	77.52
AT1G75410.2	Thale cress	nucleus	77.53	74.43
CDY29411	Canola	nucleus	49.5	64.01
CDY39359	Canola	nucleus	61.43	59.54
CDY63699	Canola	nucleus	49.3	59.33
CDX96653	Canola	nucleus	58.25	57.91
CDY21826	Canola	extracellular, plastid	8.95	46.88
CDX73171	Canola	nucleus	22.47	39.1
CDY47523	Canola	nucleus	22.27	38.75
CDY02261	Canola	nucleus	34.39	38.53
CDY46209	Canola	nucleus	28.63	38.1
CDX89711	Canola	nucleus	34.39	38.02
CDX75307	Canola	nucleus	16.1	36.49
KRH51792	Soybean	nucleus	41.95	33.12
KRH15136	Soybean	nucleus	41.35	32.7
CDY45383	Canola	nucleus	17.1	32.7
KRH05875	Soybean	nucleus	39.56	32.57
KRH61114	Soybean	nucleus	41.75	32.51
Solyc04g080790.2.1	Tomato	nucleus	38.97	29.65
PGSC0003DMT400009610	Potato	nucleus	38.37	29.2
VIT_18s0001g13150.t01	Wine grape	nucleus	40.16	28.94
CDX71279	Canola	nucleus	22.27	28.87
CDX77099	Canola	nucleus	23.46	26.28
CDY30566	Canola	nucleus	23.26	26.12
CDY40420	Canola	nucleus	32.8	26.11
CDY32069	Canola	nucleus	33.0	26.1
CDX84171	Canola	nucleus	29.82	25.51
CDX76849	Canola	nucleus	29.82	24.96
CDY45321	Canola	nucleus, plastid	33.8	24.82
CDY46061	Canola	nucleus	29.82	24.67
CDX84585	Canola	nucleus	32.21	24.14
CDX75085	Canola	nucleus	29.82	23.89
CDX79646	Canola	nucleus	32.21	23.44
CDY39669	Canola	nucleus	29.62	23.1
CDY44476	Canola	nucleus	26.04	23.06
CDY62523	Canola	nucleus	29.62	22.99
CDY24765	Canola	nucleus	30.22	22.79
CDY22463	Canola	nucleus	30.02	22.54
CDX69252	Canola	nucleus	29.82	22.49
CDX75604	Canola	nucleus	29.62	22.27
CDY40327	Canola	nucleus	24.45	21.28
CDY10473	Canola	nucleus	24.06	21.04
CDX68927	Canola	nucleus	19.09	20.82
CDX75313	Canola	nucleus	19.28	20.82
CDY69132	Canola	nucleus	23.66	20.73
CDY48107	Canola	nucleus	23.46	20.52
CDY13511	Canola	nucleus	17.69	20.37
CDX72383	Canola	nucleus	17.1	19.03
CDY55113	Canola	nucleus	19.68	18.93
CDX80798	Canola	nucleus	19.48	18.42
CDX68925	Canola	cytosol	6.36	17.68
CDX68906	Canola	nucleus	4.37	8.49

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	GO:A0A078D9G6	EnsemblPlants:CDX85896	ProteinID:CDX85896	ProteinID:CDX85896.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00143709001
InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	PFAM:PF05920	PFAM:PF07526
InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF65	SMART:SM00389	SMART:SM00574
SUPFAM:SSF46689	UniParc:UPI0004EDF629	SEG:seg	:	:	:

Description

BnaC06g22380D

Coordinates

chrLK031843:-:618311..621033

Molecular Weight (calculated)

56718.0 Da

IEP (calculated)

6.516

GRAVY (calculated)

-0.819

Length

503 amino acids

Sequence
(BLAST)

001: MAVYYQTSVG MQPLYQEPIY LNEQQQQQQA SSSSAEIISG GGGLEVPNSG SGVQNEMLFI PPTTSAGLNG SVTVSSNDLS FHGGGLSLSL GNQIQYHYQN
101: LPNQLNYNPS LSNENGKSPS SGYINGVGLY NNYRYETTGF VSSVLRSPYL KPTQLLLDEV VSVRKDSNKK TKNNNDKGQD FTNGSSENNT DNEELSSSER
201: QELQSKKNKL LTMVNEVDQR YNQYHHQMEA LASSFEMVAG LGAAKPYTSV ALNRISSHFR CLRDALKEQV QVIRGKLGED KESCEEQGER IPRLRYLDQR
301: LRQQRALHQQ LGMVRPSWRP QRGLPENSVS ILRAWLFEHF LHPYPKESEK IMLAKQTGLS KNQVANWFIN ARVRLWKPMI EEMYKEEFGD SSSELLSNSN
401: QDKDNNKMKE TSQLKHEDSS SSQQQSHGNN NVPYTSDADR STSGDYDSLM NYHQGFGVDD YNRYIGLGNQ QDATSVNLLS IVFLSMFHPC CKHGDHLDQR
501: NGM

Best Arabidopsis Sequence Match ( AT1G75410.3 )
(BLAST)

001: MAVYYPNSVG MQSLYQESIY LNEQQQQQQQ ASSSSAASFS EIVSGDVRNN EMVFIPPTSD VAVNGNVTVS SNDLSFHGGG LSLSLGNQIQ SAVSVSPFQY
101: HYQNLSNQLS YNNLNPSTMS DENGKSLSVH QHHSDQILPS SVYNNNGNNG VGFYNNYRYE TSGFVSSVLR SRYLKPTQQL LDEVVSVRKD LKLGNKKMKN
201: DKGQDFHNGS SDNITEDDKS QSQELSPSER QELQSKKSKL LTMVDEVDKR YNQYHHQMEA LASSFEMVTG LGAAKPYTSV ALNRISRHFR CLRDAIKEQI
301: QVIRGKLGER ETSDEQGERI PRLRYLDQRL RQQRALHQQL GMVRPAWRPQ RGLPENSVSI LRAWLFEHFL HPYPKESEKI MLSKQTGLSK NQVLIGSIFG
401: LAFI

Arabidopsis Description

BLH3BEL1-like homeodomain protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWS9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.