CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68812
CDX72343
CDX75215
CDX80491
CDX80798
CDX83145
CDX88165
CDY10473
CDY12943
CDY13472
CDY19545
CDY34012
CDY40327
CDY48107
CDY55113
CDY68624
CDY69132

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02030.1	CDY12943	AT1G62360.1	12897247
AT5G02030.1	CDY19545	AT1G62360.1	12897247
AT5G02030.1	CDY12943	AT1G62360.1	15019989
AT5G02030.1	CDY19545	AT1G62360.1	15019989
AT5G02030.1	CDY12943	AT1G62360.1	15781858
AT5G02030.1	CDY19545	AT1G62360.1	15781858
AT5G02030.1	CDY12943	AT1G62360.1	16513846
AT5G02030.1	CDY19545	AT1G62360.1	16513846
AT5G02030.1	CDX83145	AT4G08150.1	12897247
AT5G02030.1	CDY34012	AT4G08150.1	12897247
AT5G02030.1	CDY68624	AT4G08150.1	12897247
AT5G02030.1	CDX83145	AT4G08150.1	15019989
AT5G02030.1	CDY34012	AT4G08150.1	15019989
AT5G02030.1	CDY68624	AT4G08150.1	15019989
AT5G02030.1	CDX83145	AT4G08150.1	15781858
AT5G02030.1	CDY34012	AT4G08150.1	15781858
AT5G02030.1	CDY68624	AT4G08150.1	15781858
AT5G02030.1	CDX68812	AT4G32040.1	15781858
AT5G02030.1	CDX72343	AT4G32040.1	15781858
AT5G02030.1	CDX75215	AT4G32040.1	15781858
AT5G02030.1	CDY13472	AT4G32040.1	15781858
AT5G02030.1	CDX80798	AT5G02030.1	15781858
AT5G02030.1	CDY10473	AT5G02030.1	15781858
AT5G02030.1	CDY40327	AT5G02030.1	15781858
AT5G02030.1	CDY48107	AT5G02030.1	15781858
AT5G02030.1	CDY55113	AT5G02030.1	15781858
AT5G02030.1	CDY69132	AT5G02030.1	15781858
AT5G02030.1	CDX80491	AT5G25220.1	15781858
AT5G02030.1	CDX88165	AT5G25220.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55113	Canola	nucleus	92.67	94.26
AT5G02030.1	Thale cress	nucleus	85.71	79.3
CDY10473	Canola	nucleus	83.65	77.39
CDY40327	Canola	nucleus	83.65	76.99
CDY48107	Canola	nucleus	82.71	76.52
CDY69132	Canola	nucleus	82.52	76.48
GSMUA_Achr10P...	Banana	nucleus	9.77	50.98
Solyc10g086640.1.1	Tomato	nucleus	22.37	46.12
Solyc09g011380.2.1	Tomato	nucleus	40.79	43.06
PGSC0003DMT400062353	Potato	nucleus	40.41	42.57
VIT_08s0007g01290.t01	Wine grape	nucleus	49.62	41.12
KRH00065	Soybean	nucleus	43.98	40.84
KRH75724	Soybean	nucleus	46.05	40.23
KRH65931	Soybean	nucleus	45.68	39.38
GSMUA_Achr10P...	Banana	plastid	6.95	38.14
PGSC0003DMT400049235	Potato	nucleus	40.04	37.04
GSMUA_Achr7P14960_001	Banana	nucleus	27.26	32.95
TraesCS1D01G280300.1	Wheat	nucleus	34.02	31.59
TraesCS1A01G281100.1	Wheat	nucleus	33.83	31.36
EES18336	Sorghum	nucleus	33.46	31.23
TraesCS1B01G290200.1	Wheat	nucleus	34.02	31.21
Os05t0455200-01	Rice	nucleus	34.02	31.21
Zm00001d038355_P001	Maize	nucleus	33.08	30.56
CDX83753	Canola	nucleus	10.9	30.53
Os01t0848400-01	Rice	nucleus	34.77	30.23
EES03882	Sorghum	nucleus	33.27	29.85
Zm00001d042864_P002	Maize	nucleus	32.89	29.81
Zm00001d010060_P001	Maize	nucleus	31.39	29.14
TraesCS3B01G396100.1	Wheat	nucleus	32.71	28.06
TraesCS3D01G357400.1	Wheat	nucleus	32.52	27.77
TraesCS3A01G363900.1	Wheat	nucleus	32.71	27.71
GSMUA_Achr5P07020_001	Banana	nucleus	27.26	27.62
HORVU3Hr1G072010.1	Barley	mitochondrion	6.2	25.78
CDY29411	Canola	nucleus	18.23	24.94
CDX73171	Canola	nucleus	13.53	24.91
CDY47523	Canola	nucleus	13.53	24.91
CDX71279	Canola	nucleus	17.67	24.23
CDY02261	Canola	nucleus	20.3	24.05
CDX89711	Canola	nucleus	20.3	23.74
CDY63699	Canola	nucleus	18.61	23.68
HORVU1Hr1G072850.1	Barley	nucleus, plastid	34.59	23.17
CDY46209	Canola	nucleus	16.17	22.75
CDY52073	Canola	nucleus	20.11	22.72
CDY45383	Canola	nucleus	11.09	22.43
CDY39031	Canola	nucleus	20.11	22.38
CDX68129	Canola	nucleus	18.8	21.14
CDX73170	Canola	nucleus	20.11	20.82
CDY47524	Canola	nucleus	19.92	20.54
CDY30566	Canola	nucleus	17.29	20.54
CDY32069	Canola	nucleus	24.44	20.44
CDY40420	Canola	nucleus	24.25	20.41
CDX96653	Canola	nucleus	19.36	20.36
CDX75307	Canola	nucleus	8.46	20.27
CDY39359	Canola	nucleus	19.74	20.23
CDX76849	Canola	nucleus	22.74	20.13
CDY46061	Canola	nucleus	22.93	20.07
CDX77099	Canola	nucleus	16.92	20.04
CDY44476	Canola	nucleus	21.05	19.72
CDX69252	Canola	nucleus	24.62	19.64
CDX75604	Canola	nucleus	24.62	19.58
CDY39669	Canola	nucleus	23.68	19.53
CDX85896	Canola	nucleus	18.42	19.48
CDX84171	Canola	nucleus	21.43	19.39
CDY24765	Canola	nucleus	24.06	19.19
CDY62523	Canola	nucleus	23.31	19.14
CDY22463	Canola	nucleus	23.68	18.81
CDX84585	Canola	nucleus	23.68	18.78
CDX79646	Canola	nucleus	23.87	18.38
CDX75085	Canola	nucleus	21.62	18.31
HORVU3Hr1G085720.1	Barley	nucleus, plastid	25.38	17.93
CDY21826	Canola	extracellular, plastid	2.63	14.58
CDY45321	Canola	nucleus, plastid	18.23	14.16
CDX75313	Canola	nucleus	12.03	13.73
CDY13511	Canola	nucleus	11.09	13.5
CDX68927	Canola	nucleus	11.47	13.23
CDX72383	Canola	nucleus	10.71	12.61
CDX68925	Canola	cytosol	3.2	9.39
CDX68906	Canola	nucleus	4.14	8.49

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	GO:A0A078D0A8	EnsemblPlants:CDX80798	ProteinID:CDX80798	ProteinID:CDX80798.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00134180001	InterPro:Homeobox-like_sf
InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom
PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF82	SMART:SM00389	SMART:SM00574	SUPFAM:SSF46689
UniParc:UPI0004EE05B0	SEG:seg	:	:	:	:

Description

BnaC03g00520D

Coordinates

chrLK031823:+:265833..269157

Molecular Weight (calculated)

57118.2 Da

IEP (calculated)

7.342

GRAVY (calculated)

-0.488

Length

532 amino acids

Sequence
(BLAST)

001: MADAYEPYHI LQQSRRDKLR IPSLDSHFHF NHPPPPSSSG GGLFPFTDSD YLAAGGFHSN NNSNHISNPS HSNFMGFLGG PSSSSSAAVT VAGDPSFNAE
101: LSSGDVLVFR PEPLSLSLSS HPRLAYDLVV PGVASFGFCR SASEAAAAAV TVASRSSGPL GPCTGYASIL KGSRFLKPAQ MLLDEFCNVA LGVYTDKVMD
201: DEDDSSLLFD PTVETLCGVS GEHGKKKSKL ISMLDEVYKR YKQYYEQLQA VMGSFECVAG LGHAAPYASL TLKALSKHFK CLKTAITDQL QFSTNNKRQQ
301: QCGHVMDSDN KTDSLRFGGS DSGRGFYPTD TDKLVLAKHT GLSRNQVSNW FINARVRVWK PMVEEIHMLE TRQSQRSSSS SWRDERSTAD FPDNNNDNPS
401: SSSAQQRANN NSSPARRVRN HDVHGPNSNN NNNFMNAGSG GSGGGAVSFS YGIASSNIPG ISSSTNGGVS LTLGLHHQIG LSEPFPMTTA QRLGLDGGSS
501: GGGGGGYDRQ NRQFGRDFIG GSNHQFLHDF VG

Best Arabidopsis Sequence Match ( AT5G02030.1 )
(BLAST)

001: MADAYEPYHV LQQSRRDKLR IPSLDSHFHF HPPPPPSSGG GGGVFPLADS DFLAAGGFHS NNNNNHISNP SYSNFMGFLG GPSSSSSTAV AVAGDHSFNA
101: GLSSGDVLVF KPEPLSLSLS SHPRLAYDLV VPGVVNSGFC RSAGEANAAA VTIASRSSGP LGPFTGYASI LKGSRFLKPA QMLLDEFCNV GRGIYTDKVI
201: DDDDSSLLFD PTVENLCGVS DGGGGDNGKK KSKLISMLDE VYKRYKQYYE QLQAVMGSFE CVAGLGHAAP YANLALKALS KHFKCLKNAI TDQLQFSHNN
301: KIQQQQQCGH PMNSENKTDS LRFGGSDSSR GLCSAGQRHG FPDHHAPVWR PHRGLPERAV TVLRAWLFDH FLHPYPTDTD KLMLAKQTGL SRNQVSNWFI
401: NARVRVWKPM VEEIHMLETR QSQRSSSSSW RDERTSTTVF PDNSNNNPSS SSAQQRPNNS SPPRRARNDD VHGTNNNNSY VNSGSGGGSA VGFSYGIGSS
501: NVPVMNSSTN GGVSLTLGLH HQIGLPEPFP MTTAQRFGLD GGSGDGGGGY EGQNRQFGRD FIGGSNHQFL HDFVG

Arabidopsis Description

BLH9BEL1-like homeodomain protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.