Factsheet for VIT_08s0007g01290.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g06130.t01
VIT_08s0007g01290.t01
VIT_10s0116g00190.t01
VIT_18s0001g08380.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02030.1	VIT_10s0116g00190.t01	AT1G62360.1	12897247
AT5G02030.1	VIT_10s0116g00190.t01	AT1G62360.1	15019989
AT5G02030.1	VIT_10s0116g00190.t01	AT1G62360.1	15781858
AT5G02030.1	VIT_10s0116g00190.t01	AT1G62360.1	16513846
AT5G02030.1	VIT_18s0001g08380.t01	AT4G08150.1	12897247
AT5G02030.1	VIT_18s0001g08380.t01	AT4G08150.1	15019989
AT5G02030.1	VIT_18s0001g08380.t01	AT4G08150.1	15781858
AT5G02030.1	VIT_04s0008g06130.t01	AT4G32040.1	15781858
AT5G02030.1	VIT_08s0007g01290.t01	AT5G02030.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75724	Soybean	nucleus	62.93	66.34
KRH65931	Soybean	nucleus	62.31	64.83
KRH00065	Soybean	nucleus	57.48	64.4
Solyc10g086640.1.1	Tomato	nucleus	24.61	61.24
GSMUA_Achr10P...	Banana	nucleus	9.19	57.84
PGSC0003DMT400062353	Potato	nucleus	45.17	57.43
Solyc09g011380.2.1	Tomato	nucleus	44.55	56.75
AT5G02030.1	Thale cress	nucleus	47.66	53.22
PGSC0003DMT400049235	Potato	nucleus	47.35	52.87
HORVU3Hr1G072010.1	Barley	mitochondrion	10.44	52.34
CDY40327	Canola	nucleus	46.57	51.73
Bra005703.1-P	Field mustard	nucleus	45.64	51.4
Bra009618.1-P	Field mustard	nucleus	46.88	51.37
CDY10473	Canola	nucleus	45.95	51.3
CDY55113	Canola	nucleus	40.5	49.71
CDX80798	Canola	nucleus	41.12	49.62
CDY48107	Canola	nucleus	44.39	49.57
Bra028883.1-P	Field mustard	nucleus	45.02	49.49
CDY69132	Canola	nucleus	44.24	49.48
GSMUA_Achr7P14960_001	Banana	nucleus	32.71	47.73
GSMUA_Achr10P...	Banana	plastid	7.01	46.39
EES18336	Sorghum	nucleus	37.54	42.28
TraesCS1D01G280300.1	Wheat	nucleus	37.38	41.88
TraesCS1A01G281100.1	Wheat	nucleus	37.38	41.81
Os05t0455200-01	Rice	nucleus	37.54	41.55
TraesCS1B01G290200.1	Wheat	nucleus	37.54	41.55
Zm00001d038355_P001	Maize	nucleus	37.23	41.49
Zm00001d042864_P002	Maize	nucleus	37.69	41.23
EES03882	Sorghum	nucleus	37.54	40.64
Os01t0848400-01	Rice	nucleus	38.63	40.52
GSMUA_Achr5P07020_001	Banana	nucleus	32.4	39.62
VIT_13s0019g02450.t01	Wine grape	nucleus	30.22	38.96
TraesCS3D01G357400.1	Wheat	nucleus	37.69	38.84
Zm00001d010060_P001	Maize	nucleus	34.58	38.74
TraesCS3B01G396100.1	Wheat	nucleus	37.38	38.71
TraesCS3A01G363900.1	Wheat	nucleus	37.54	38.38
VIT_18s0001g11800.t01	Wine grape	nucleus	18.54	34.1
HORVU1Hr1G072850.1	Barley	nucleus, plastid	38.16	30.86
VIT_02s0025g00200.t01	Wine grape	nucleus	29.13	28.95
HORVU3Hr1G085720.1	Barley	nucleus, plastid	30.37	25.9
VIT_18s0001g13130.t01	Wine grape	nucleus	18.54	25.32
VIT_08s0105g00230.t01	Wine grape	nucleus	24.45	25.16
VIT_06s0004g02580.t01	Wine grape	nucleus	29.13	24.93
VIT_04s0023g01020.t01	Wine grape	nucleus	32.24	24.47
VIT_03s0038g00050.t01	Wine grape	nucleus	25.55	23.73
VIT_06s0009g00410.t01	Wine grape	nucleus	26.64	23.49
VIT_18s0001g13150.t01	Wine grape	nucleus	23.05	21.2
VIT_04s0008g00880.t01	Wine grape	nucleus	17.13	18.68

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100266680	MapMan:15.5.3.5	EMBL:AM426746	ProteinID:CAN73410	ProteinID:CAN73410.1
ProteinID:CCB55542	ProteinID:CCB55542.1	UniProt:F6HL25	EMBL:FN595991	GO:GO:0000003	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0007389	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0010051	GO:GO:0010076	GO:GO:0010077	GO:GO:0010089
GO:GO:0010154	GO:GO:0010223	GO:GO:0010228	GO:GO:0043565	GO:GO:0045892	GO:GO:0048367
GO:GO:0048457	GO:GO:0080006	GO:GO:1905393	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom
InterPro:IPR001356	PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850
PANTHER:PTHR11850:SF82	SMART:SM00389	SMART:SM00574	SUPFAM:SSF46689	TIGR:TC55301	UniParc:UPI0001983C30
ArrayExpress:VIT_08s0007g01290	EnsemblPlantsGene:VIT_08s0007g01290	EnsemblPlants:VIT_08s0007g01290.t01	unigene:Vvi.599	RefSeq:XP_010654234.1	SEG:seg

Description

No Description!

Coordinates

chr8:-:15381967..15387791

Molecular Weight (calculated)

70168.3 Da

IEP (calculated)

6.896

GRAVY (calculated)

-0.477

Length

642 amino acids

Sequence
(BLAST)

001: MADGFEPYHV PQQSRRDKLR VVAQNHSGCV EAATNLHGCA GLLPLYDPSL LPSDLLTCAS ASAHEFQHHS HPLSGSAEAC KANPGCVVKE EGVNLMGYVG
101: GIMNASSSSS TSHHPYLDPQ SSLPINPSSI QDMNHNPFFY APQNLRDFDQ SFNGGEMVVF KPEPLSLTHH ESNTTGQGLS LSLSSHHTHQ NNLPLELNLQ
201: RYGSAIFSDK VTGGYMVPGI VGGSGSTSND VSRSSVPLGP FTGYASILKG SRFLKPAQQL LEEFCDVGCG LYAERVSADS SMMDPPMESL SGTGIVDDPL
301: SCGDGGEHRR KKSRLISMLD EVYRRYKHYY QQMQAVVASF ESVAGLGNAA PYADLALKAM SKHFRCLKNA ITDQLQFTNK AHGQISHGKD ESPRFGNTDR
401: GLYGQRPMHS SGFLEHQPVW RPQRGLPERA VTVLRAWLFE HFLHPYPTDT DKLMLAKQTG LSRNQVSNWF INARVRLWKP MVEEIHTLET RQAQKSSQRE
501: ERSADRQSDH LPSANSLVFE NPSTSAQRVQ DAPSKRTRNE LSEVHVGSEE PMNLSYNNLS AHPHVGVGVS TAGGSSNVSL TLGLHQNNGI GLSESFPINA
601: AQRFGLGLDA NSEGYVIGGF EAQNRHFGRD VIGGQLLHDF VG

Best Arabidopsis Sequence Match ( AT5G02030.1 )
(BLAST)

001: MADAYEPYHV LQQSRRDKLR IPSLDSHFHF HPPPPPSSGG GGGVFPLADS DFLAAGGFHS NNNNNHISNP SYSNFMGFLG GPSSSSSTAV AVAGDHSFNA
101: GLSSGDVLVF KPEPLSLSLS SHPRLAYDLV VPGVVNSGFC RSAGEANAAA VTIASRSSGP LGPFTGYASI LKGSRFLKPA QMLLDEFCNV GRGIYTDKVI
201: DDDDSSLLFD PTVENLCGVS DGGGGDNGKK KSKLISMLDE VYKRYKQYYE QLQAVMGSFE CVAGLGHAAP YANLALKALS KHFKCLKNAI TDQLQFSHNN
301: KIQQQQQCGH PMNSENKTDS LRFGGSDSSR GLCSAGQRHG FPDHHAPVWR PHRGLPERAV TVLRAWLFDH FLHPYPTDTD KLMLAKQTGL SRNQVSNWFI
401: NARVRVWKPM VEEIHMLETR QSQRSSSSSW RDERTSTTVF PDNSNNNPSS SSAQQRPNNS SPPRRARNDD VHGTNNNNSY VNSGSGGGSA VGFSYGIGSS
501: NVPVMNSSTN GGVSLTLGLH HQIGLPEPFP MTTAQRFGLD GGSGDGGGGY EGQNRQFGRD FIGGSNHQFL HDFVG

Arabidopsis Description

BLH9BEL1-like homeodomain protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.