Factsheet for Bra028883.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000638.1-P
Bra005703.1-P
Bra009618.1-P
Bra009826.1-P
Bra011317.1-P
Bra023965.1-P
Bra027050.1-P
Bra028883.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02030.1	Bra027050.1-P	AT1G62360.1	12897247
AT5G02030.1	Bra027050.1-P	AT1G62360.1	15019989
AT5G02030.1	Bra027050.1-P	AT1G62360.1	15781858
AT5G02030.1	Bra027050.1-P	AT1G62360.1	16513846
AT5G02030.1	Bra000638.1-P	AT4G08150.1	12897247
AT5G02030.1	Bra000638.1-P	AT4G08150.1	15019989
AT5G02030.1	Bra000638.1-P	AT4G08150.1	15781858
AT5G02030.1	Bra011317.1-P	AT4G32040.1	15781858
AT5G02030.1	Bra023965.1-P	AT4G32040.1	15781858
AT5G02030.1	Bra005703.1-P	AT5G02030.1	15781858
AT5G02030.1	Bra009618.1-P	AT5G02030.1	15781858
AT5G02030.1	Bra028883.1-P	AT5G02030.1	15781858
AT5G02030.1	Bra009826.1-P	AT5G25220.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69132	Canola	nucleus	97.26	98.95
AT5G02030.1	Thale cress	nucleus	86.3	87.65
Bra005703.1-P	Field mustard	nucleus	84.08	86.14
Bra009618.1-P	Field mustard	nucleus	85.96	85.67
Solyc10g086640.1.1	Tomato	nucleus	24.83	56.2
GSMUA_Achr10P...	Banana	nucleus	9.08	51.96
Solyc09g011380.2.1	Tomato	nucleus	42.47	49.21
HORVU3Hr1G072010.1	Barley	mitochondrion	10.62	48.44
PGSC0003DMT400062353	Potato	nucleus	41.61	48.12
KRH00065	Soybean	nucleus	45.03	45.9
KRH75724	Soybean	nucleus	47.26	45.32
VIT_08s0007g01290.t01	Wine grape	nucleus	49.49	45.02
KRH65931	Soybean	nucleus	47.09	44.57
GSMUA_Achr10P...	Banana	plastid	7.02	42.27
PGSC0003DMT400049235	Potato	nucleus	40.75	41.39
GSMUA_Achr7P14960_001	Banana	nucleus	29.62	39.32
TraesCS1D01G280300.1	Wheat	nucleus	36.82	37.52
TraesCS1B01G290200.1	Wheat	nucleus	37.16	37.41
TraesCS1A01G281100.1	Wheat	nucleus	36.64	37.28
Os05t0455200-01	Rice	nucleus	36.82	37.07
EES18336	Sorghum	nucleus	35.96	36.84
Zm00001d038355_P001	Maize	nucleus	35.62	36.11
Os01t0848400-01	Rice	nucleus	37.5	35.78
Zm00001d042864_P002	Maize	nucleus	35.27	35.09
EES03882	Sorghum	nucleus	35.62	35.08
Zm00001d010060_P001	Maize	nucleus	33.9	34.55
TraesCS3B01G396100.1	Wheat	nucleus	36.47	34.35
TraesCS3D01G357400.1	Wheat	nucleus	36.3	34.03
TraesCS3A01G363900.1	Wheat	nucleus	36.3	33.76
Bra032147.1-P	Field mustard	nucleus	18.49	33.75
Bra010577.1-P	Field mustard	nucleus	19.01	33.74
Bra011713.1-P	Field mustard	nucleus	19.52	33.43
GSMUA_Achr5P07020_001	Banana	nucleus	29.62	32.95
Bra025758.1-P	Field mustard	nucleus	20.55	30.85
Bra015844.1-P	Field mustard	nucleus	15.07	30.45
Bra013076.1-P	Field mustard	nucleus	22.09	28.67
Bra013075.1-P	Field mustard	nucleus	20.55	28.17
HORVU1Hr1G072850.1	Barley	nucleus, plastid	37.33	27.46
Bra008197.1-P	Field mustard	nucleus	21.75	27.19
Bra003753.1-P	Field mustard	nucleus	21.06	26.0
Bra017666.1-P	Field mustard	nucleus	23.29	25.76
Bra034335.1-P	Field mustard	nucleus	19.18	25.0
Bra016497.1-P	Field mustard	nucleus	21.06	24.6
Bra015845.1-P	Field mustard	nucleus	21.58	24.28
Bra001976.1-P	Field mustard	nucleus	18.32	24.1
Bra039212.1-P	Field mustard	nucleus	24.83	23.85
Bra025497.1-P	Field mustard	nucleus	24.14	23.78
Bra017277.1-P	Field mustard	nucleus	26.03	22.52
HORVU3Hr1G085720.1	Barley	nucleus, plastid	28.25	21.91
Bra005310.1-P	Field mustard	nucleus	23.29	21.66
Bra023045.1-P	Field mustard	nucleus	22.26	19.91
Bra037031.1-P	Field mustard	nucleus	13.36	17.85
Bra011403.1-P	Field mustard	nucleus	14.21	17.81

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	EnsemblPlantsGene:Bra028883	EnsemblPlants:Bra028883.1	EnsemblPlants:Bra028883.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:M4EJB7
PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF82
SMART:SM00389	SMART:SM00574	SUPFAM:SSF46689	UniParc:UPI0002543638	SEG:seg	:

Description

AT5G02030 (E=1e-229) LSN, PNY, HB-6, BLR, RPL, BLH9, VAN | RPL (REPLUMLESS); DNA binding / sequence-specific DNA binding / transcription factor

Coordinates

chrA02:+:1598439..1601745

Molecular Weight (calculated)

62720.9 Da

IEP (calculated)

7.301

GRAVY (calculated)

-0.483

Length

584 amino acids

Sequence
(BLAST)

001: MSDAYEPYHV LQHSRRDKLR MPSLDSHFHF HHPPPPPSSS GGGGVFPIAD SDFLAAGGFH SNNNNNPSYS NFMGFLGGQS SSSSTAVAVA GDHSFNAGLS
101: SGDVLVFKPE PLSLSLSSHP RPTYDLVVPG VVNSGLCRSA AEAAAAAVTV ASRSSGPLGP FTGYASILKG SKFLKPAQML LDDFCSVSRA VYTEQIVDDE
201: DDDSSLLFDP TIDNLCGVSD AGVGENGKKK SKLISMLDEV YKRYKQYYEQ LQAVMGSFEC VAGLGHAAPY ASLTLKVLSK HFKCLKNAIT DQLQFSTNNK
301: IQQQRGHVMN SENKTDFLGF GGSDNSRGLC STGQRHGFPD HHAPVWRPHR GLPERAVTVL RAWLFDHFLH PYPTDTDKLM LAKQTGLSRN QVSNWFINAR
401: VRVWKPMVEE IHMLETRQSQ KSSSSWRDTT TAFPDNNNNP SSSTAQQRAN NNSSPARRVR NDDVHANTNN NNNHFMNAGN GGNIGGGGAV SFSYGIASSN
501: VPGMNTSTNG GVSLTLGLHH QIGLPEPFPM TTAQRFGLDG GSSGGGAGGE SYGGGGGGYE GQDRPFGRDF IGGSNHQFLH DFVG

Best Arabidopsis Sequence Match ( AT5G02030.1 )
(BLAST)

001: MADAYEPYHV LQQSRRDKLR IPSLDSHFHF HPPPPPSSGG GGGVFPLADS DFLAAGGFHS NNNNNHISNP SYSNFMGFLG GPSSSSSTAV AVAGDHSFNA
101: GLSSGDVLVF KPEPLSLSLS SHPRLAYDLV VPGVVNSGFC RSAGEANAAA VTIASRSSGP LGPFTGYASI LKGSRFLKPA QMLLDEFCNV GRGIYTDKVI
201: DDDDSSLLFD PTVENLCGVS DGGGGDNGKK KSKLISMLDE VYKRYKQYYE QLQAVMGSFE CVAGLGHAAP YANLALKALS KHFKCLKNAI TDQLQFSHNN
301: KIQQQQQCGH PMNSENKTDS LRFGGSDSSR GLCSAGQRHG FPDHHAPVWR PHRGLPERAV TVLRAWLFDH FLHPYPTDTD KLMLAKQTGL SRNQVSNWFI
401: NARVRVWKPM VEEIHMLETR QSQRSSSSSW RDERTSTTVF PDNSNNNPSS SSAQQRPNNS SPPRRARNDD VHGTNNNNSY VNSGSGGGSA VGFSYGIGSS
501: NVPVMNSSTN GGVSLTLGLH HQIGLPEPFP MTTAQRFGLD GGSGDGGGGY EGQNRQFGRD FIGGSNHQFL HDFVG

Arabidopsis Description

BLH9BEL1-like homeodomain protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.