Factsheet for Bra009826.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001976.1-P
Bra005703.1-P
Bra006085.1-P
Bra008500.1-P
Bra009618.1-P
Bra018316.1-P
Bra021632.1-P
Bra022796.1-P
Bra025497.1-P
Bra028883.1-P
Bra031546.1-P
Bra035202.1-P
Bra040948.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25220.1	Bra031546.1-P	AT1G06920.1	15781858
AT5G25220.1	Bra008500.1-P	AT1G79960.1	15781858
AT5G25220.1	Bra035202.1-P	AT1G79960.1	15781858
AT5G25220.1	Bra001976.1-P	AT2G16400.1	15781858
AT5G25220.1	Bra018316.1-P	AT2G30400.1	15781858
AT5G25220.1	Bra021632.1-P	AT2G30400.1	15781858
AT5G25220.1	Bra022796.1-P	AT2G30400.1	15781858
AT5G25220.1	Bra040948.1-P	AT5G01840.1	15781858
AT5G25220.1	Bra005703.1-P	AT5G02030.1	15781858
AT5G25220.1	Bra009618.1-P	AT5G02030.1	15781858
AT5G25220.1	Bra028883.1-P	AT5G02030.1	15781858
AT5G25220.1	Bra006085.1-P	AT5G11060.1	15781858
AT5G25220.1	Bra025497.1-P	AT5G41410.1	11701881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88165	Canola	nucleus	68.12	94.31
AT5G25220.1	Thale cress	nucleus	91.06	87.47
Bra006085.1-P	Field mustard	nucleus	74.88	80.31
Bra020491.1-P	Field mustard	nucleus	75.85	79.9
TraesCS5B01G454600.1	Wheat	nucleus	33.33	78.41
Bra028554.1-P	Field mustard	nucleus	72.46	77.52
TraesCS6D01G134800.1	Wheat	nucleus	35.75	71.5
CDX80491	Canola	nucleus	76.57	71.4
Solyc08g041820.2.1	Tomato	nucleus	58.45	69.34
PGSC0003DMT400040351	Potato	nucleus	59.9	67.95
OQU84501	Sorghum	nucleus	49.03	66.34
KXG20488	Sorghum	nucleus	50.48	65.52
Os02t0182800-01	Rice	nucleus	49.52	65.5
TraesCS7D01G501000.1	Wheat	nucleus	48.79	65.37
TraesCS6A01G145500.1	Wheat	nucleus	48.31	65.36
Zm00001d046568_P001	Maize	nucleus	49.76	65.19
TraesCS6B01G173900.1	Wheat	nucleus	46.86	65.1
Os06t0646600-01	Rice	nucleus	50.48	64.71
HORVU6Hr1G028610.2	Barley	nucleus	47.83	64.08
TraesCS1B01G135600.1	Wheat	nucleus	43.48	64.06
Zm00001d053749_P002	Maize	nucleus	48.55	63.01
Zm00001d015549_P001	Maize	nucleus	48.79	62.15
TraesCS7B01G423100.2	Wheat	nucleus	48.31	59.7
Bra011317.1-P	Field mustard	nucleus	53.86	59.63
Bra036636.1-P	Field mustard	nucleus	42.27	59.52
Bra027006.1-P	Field mustard	nucleus	42.03	58.98
HORVU7Hr1G114650.2	Barley	nucleus	45.17	57.89
Bra023965.1-P	Field mustard	nucleus	52.66	56.92
TraesCS7A01G511800.2	Wheat	nucleus	48.55	50.25
Bra016348.1-P	Field mustard	nucleus	20.05	26.43
Bra024591.1-P	Field mustard	nucleus	19.81	25.0
Bra007920.1-P	Field mustard	nucleus	18.6	23.55
Bra000638.1-P	Field mustard	nucleus	21.01	22.48
Bra024592.1-P	Field mustard	nucleus	11.11	21.7
Bra024593.1-P	Field mustard	nucleus	10.63	21.05
Bra027050.1-P	Field mustard	nucleus	18.6	20.16

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	EnsemblPlantsGene:Bra009826	EnsemblPlants:Bra009826.1	EnsemblPlants:Bra009826.1-P	InterPro:ELK_dom
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009416	GO:GO:0009628	GO:GO:0009719
GO:GO:0009722	GO:GO:0009987	GO:GO:0071345	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2	UniProt:M4D028	PFAM:PF03789
PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850
PANTHER:PTHR11850:SF95	SMART:SM00389	SMART:SM01188	SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689
UniParc:UPI000253F2DF	SEG:seg	:	:	:	:

Description

AT5G25220 (E=4e-150) KNAT3 | KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3); transcription activator/ transcription factor

Coordinates

chrA06:+:17542762..17544490

Molecular Weight (calculated)

45442.9 Da

IEP (calculated)

5.958

GRAVY (calculated)

-0.676

Length

414 amino acids

Sequence
(BLAST)

001: MAFHQNHLSQ DLSFNHFTDQ HQPPPPPPPP QQQQHFQDAA PPNWLNTALL RSDNNFLNLH TTTANATAAS SSDSPSSAAV AANQWLSRSS SFLQRTANNN
101: NNNNAAASVV GDVIDDVTGG GAEQMMSGGE NKNDGGGGEG VVSWQNARHK AEILSHPLYE QLLSAHVACL RIATPVDQLP RIDAQLAQSQ HVVAKYSTLG
201: GGGQGLVGDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAGMACGEIE QSLQSLTGVS PGEGMGATMS DDEDEQVESD ANMFDGGLDV LGFGPLIPTE
301: SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSVLK ACEHLQEEDK ARLVQETGLQ LKQINNWFIN QRKRNWHSNP SSSTVLKNKR
401: KSNAGDNSGR ERFT

Best Arabidopsis Sequence Match ( AT5G25220.1 )
(BLAST)

001: MAFHHNHLSQ DLSFNHFTDQ HQPPPPQPPP PPPQQQQHFQ EAPPPNWLNT ALLRSSDNNN NFLNLHTATA NTTTASSSDS PSSAAAAAAA NQWLSRSSSF
101: LQRNNNNNAS IVGDGIDDVT GGADTMIQGE MKTGGGENKN DGGGATAADG VVSWQNARHK AEILSHPLYE QLLSAHVACL RIATPVDQLP RIDAQLAQSQ
201: HVVAKYSALG AAAQGLVGDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGMGATMS DDEDEQVESD ANMFDGGLDV
301: LGFGPLIPTE SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK
401: RNWHSNPSSS TVLKNKRKSN AGDNSGRERF A

Arabidopsis Description

KNAT3KNAT3 [Source:UniProtKB/TrEMBL;Acc:A0A178U9D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.