Factsheet for Bra040948.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000638.1-P
Bra006085.1-P
Bra009826.1-P
Bra011317.1-P
Bra011403.1-P
Bra023965.1-P
Bra025497.1-P
Bra027006.1-P
Bra036636.1-P
Bra037031.1-P
Bra040948.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01840.1	Bra027006.1-P	AT1G62990.1	15781858
AT5G01840.1	Bra036636.1-P	AT1G62990.1	15781858
AT5G01840.1	Bra000638.1-P	AT4G08150.1	15781858
AT5G01840.1	Bra011317.1-P	AT4G32040.1	15781858
AT5G01840.1	Bra023965.1-P	AT4G32040.1	15781858
AT5G01840.1	Bra011403.1-P	AT4G32980.1	15781858
AT5G01840.1	Bra037031.1-P	AT4G32980.1	15781858
AT5G01840.1	Bra040948.1-P	AT5G01840.1	15781858
AT5G01840.1	Bra006085.1-P	AT5G11060.1	15781858
AT5G01840.1	Bra009826.1-P	AT5G25220.1	15781858
AT5G01840.1	Bra025497.1-P	AT5G41410.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04827	Canola	nucleus	96.58	98.83
AT5G01840.1	Thale cress	nucleus	70.72	68.89
Bra024464.1-P	Field mustard	cytosol	11.41	34.48
Bra022796.1-P	Field mustard	nucleus	33.46	28.57
Bra018316.1-P	Field mustard	nucleus	33.46	27.85
Bra021632.1-P	Field mustard	nucleus	33.46	27.16
Bra031546.1-P	Field mustard	mitochondrion, nucleus, plastid	29.28	25.58
VIT_06s0004g07910.t01	Wine grape	nucleus	41.83	24.72
Bra017266.1-P	Field mustard	nucleus	15.97	22.58
Bra002657.1-P	Field mustard	nucleus	28.9	22.22
Bra005303.1-P	Field mustard	mitochondrion, plastid	15.21	21.51
Bra020055.1-P	Field mustard	mitochondrion	15.97	20.39
Bra013354.1-P	Field mustard	mitochondrion	22.81	18.4
Bra020989.1-P	Field mustard	mitochondrion	22.43	18.38
Bra002252.1-P	Field mustard	mitochondrion	14.83	18.31
Bra012575.1-P	Field mustard	nucleus	23.57	16.76
Bra039604.1-P	Field mustard	nucleus	19.77	16.51

Protein Annotations

MapMan:15.5.37	EnsemblPlantsGene:Bra040948	EnsemblPlants:Bra040948.1	EnsemblPlants:Bra040948.1-P	InterPro:DNA_bnd_dom_ovate	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005856	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009653	GO:GO:0009987	GO:GO:0016043	GO:GO:0016049	GO:GO:0040007
GO:GO:0045892	GO:GO:0051510	InterPro:IPR006458	UniProt:M4FIL9	InterPro:Ovate	InterPro:Ovate_C
PFAM:PF04844	PFAM:PF13724	PFscan:PS51754	PANTHER:PTHR33057	PANTHER:PTHR33057:SF22	TIGRFAMs:TIGR01568
UniParc:UPI000253EAD5	SEG:seg	:	:	:	:

Description

AT5G01840 (E=1e-025) ATOFP1, OFP1 | OFP1 (OVATE FAMILY PROTEIN 1); protein binding / transcription repressor

Coordinates

chrScaffold000327:-:16885..17676

Molecular Weight (calculated)

29394.2 Da

IEP (calculated)

10.915

GRAVY (calculated)

-0.603

Length

263 amino acids

Sequence
(BLAST)

001: MGNYRFKLSE LVPNAWFYKL RDMGKSRKKQ HNSTVSLSPI KKHQPVPTPT PTTARSPRLP LRRSSSYYAR PRKSVRNRAT TVSSAPPKQV TESFSPPEFR
101: SDQLLIPEES SSHSPCSSCV SSKAATLTPP PELDLHPIIT KPTTTVRKTA VSTSPAGVRL RLRSPRISTR KTASSGGARI AGTSATASSR RSRAVVKASV
201: DPRRDFKESM EEMITENKIR ESKDLEELLA CYLCLNSDEY HHIIINVFKQ IWLDLNLSPH LSL

Best Arabidopsis Sequence Match ( AT5G01840.1 )
(BLAST)

001: MGNNYRFKLS ELIPNAWFYK LRDMSKSKKK NLQSQPNSTT SKKKHHAVPT PTSTTPLSPR PPRRPSHSSK APPSHPPRKS SGNRLRHRAT VDSKSSTTSG
101: DSTTTETGSF SPDFRSDQVL LPDESLTGSW HSPCSSKLSK TATFTPPPEL ELRPIITKTA ATARKTAVNS PAGVRLRMRS PRISVSSSAR RSGSSARRSR
201: AVVKASVDPK RDFKESMEEM IAENKIRATK DLEELLACYL CLNSDEYHAI IINVFKQIWL DLNLPPPHSK

Arabidopsis Description

OFP1Transcription repressor OFP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.