Factsheet for Bra002657.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 2
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra011317.1-P
Bra023965.1-P
Bra027006.1-P
Bra036636.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58360.1	Bra027006.1-P	AT1G62990.1	15781858
AT5G58360.1	Bra036636.1-P	AT1G62990.1	15781858
AT5G58360.1	Bra011317.1-P	AT4G32040.1	15781858
AT5G58360.1	Bra023965.1-P	AT4G32040.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32990	Canola	nucleus	82.75	98.95
AT5G58360.1	Thale cress	nucleus	59.65	68.92
Bra024464.1-P	Field mustard	cytosol	9.36	36.78
KRH17171	Soybean	nucleus, plastid	34.8	31.82
KRH30114	Soybean	nucleus	33.92	31.69
KRG98156	Soybean	nucleus	35.67	31.69
KRH72818	Soybean	nucleus	35.09	31.33
Bra018316.1-P	Field mustard	nucleus	28.07	30.38
Bra022796.1-P	Field mustard	nucleus	27.19	30.19
PGSC0003DMT400078126	Potato	nucleus	30.7	29.91
Solyc06g082460.1.1	Tomato	nucleus	30.12	29.34
Bra040948.1-P	Field mustard	nucleus	22.22	28.9
Bra021632.1-P	Field mustard	nucleus	26.32	27.78
Bra031546.1-P	Field mustard	mitochondrion, nucleus, plastid	24.27	27.57
GSMUA_Achr3P09850_001	Banana	mitochondrion	25.44	27.44
Bra005303.1-P	Field mustard	mitochondrion, plastid	11.99	22.04
Bra020055.1-P	Field mustard	mitochondrion	13.16	21.84
Bra017266.1-P	Field mustard	nucleus	11.7	21.51
Bra002252.1-P	Field mustard	mitochondrion	12.87	20.66
Bra013354.1-P	Field mustard	mitochondrion	17.54	18.4
Bra020989.1-P	Field mustard	mitochondrion	16.96	18.07
Bra039604.1-P	Field mustard	nucleus	14.33	15.56
Bra012575.1-P	Field mustard	nucleus	16.67	15.41

Protein Annotations

MapMan:15.5.37	EnsemblPlantsGene:Bra002657	EnsemblPlants:Bra002657.1	EnsemblPlants:Bra002657.1-P	InterPro:DNA_bnd_dom_ovate	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045892	InterPro:IPR006458	UniProt:M4CEM6	InterPro:Ovate
InterPro:Ovate_C	PFAM:PF04844	PFAM:PF13724	PFscan:PS51754	PANTHER:PTHR33057	PANTHER:PTHR33057:SF38
TIGRFAMs:TIGR01568	UniParc:UPI0002545349	SEG:seg	:	:	:

Description

AT5G58360 (E=5e-051) ATOFP3, OFP3 | ATOFP3

Coordinates

chrA10:-:8364418..8365446

Molecular Weight (calculated)

38437.6 Da

IEP (calculated)

10.763

GRAVY (calculated)

-0.901

Length

342 amino acids

Sequence
(BLAST)

001: MKEMNQKMGT HKFRFSDIMP PSWLYKLKGM SRSSRKHLPS SPKHLSTDAS SSRNTLRLSS SPYHPQGSSS PPKSPFKRKL KRKTVYKPSS RLKLSSSSFN
101: PHAPLTTSRN HRSKPTSPNE IILEPSLTSS RNHRSKSFSA NAIIVEPSLT SSRDHRSKPS SANAVSDSTV GSSSDPLSSS PSEQDYLESH SVDVKNNHSV
201: KKHVSEDPLV SDNSSPVLAE TMKKPHFEIK TQQKLKKPKA GSTGIRIRAH SPRIARKKTK GRTSPQPMKK ETAESFAIVL TSVDPERDFR ESMVEMIVEN
301: KMKEQKDLED LLACYLSLNS SEYHDTIIKA FEKTWFHLTH SM

Best Arabidopsis Sequence Match ( AT5G58360.1 )
(BLAST)

001: MKQKMGTHKF RFSDMMPHSW LYKLKGMSRS SRKHHLSSPK HLSSADASSS RKLRDPLRRL SSTAHHPQAS NSPPKSSSFK RKIKRKTVYK PSSRLKLSTS
101: SSLNHRSKSS SSANAISDSA VGSFLDRVSS PSDQNFVHDP EPHSSIDIKD ELSVRKLDDV PEDPSVSPNL SPETAKEPPF EMMTQQKLKK PKAHSSGIKI
201: PTKIVRKKKK ERTSQVSKKK GVVKSFAIVL SSVDPEKDFR ESMVEMIMEN KMREQKDLED LLACYLSLNS SEYHDVIIKA FENTWLHLTQ GLSISL

Arabidopsis Description

OFP3Transcription repressor OFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.