Factsheet for Solyc06g082460.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 1
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g080120.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58360.1	Solyc08g080120.2.1	AT1G62990.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078126	Potato	nucleus	92.59	92.59
CDY02814	Canola	cytosol	9.4	66.0
CDY32706	Canola	cytosol	9.4	66.0
Solyc09g018200.1.1	Tomato	nucleus	29.63	41.43
KRG98156	Soybean	nucleus	43.3	39.48
KRH72818	Soybean	nucleus	42.17	38.64
KRH30114	Soybean	nucleus	39.6	37.98
KRH17171	Soybean	nucleus, plastid	40.17	37.7
CDY43860	Canola	nucleus	29.34	35.52
CDY32990	Canola	nucleus	28.21	34.62
AT5G58360.1	Thale cress	nucleus	28.77	34.12
Solyc10g076180.1.1	Tomato	nucleus	30.77	33.64
Bra002657.1-P	Field mustard	nucleus	29.34	30.12
Solyc11g068780.1.1	Tomato	cytosol	11.4	29.2
GSMUA_Achr3P09850_001	Banana	mitochondrion	26.21	29.02
Solyc10g082050.1.1	Tomato	mitochondrion	11.4	22.47
Solyc01g007800.2.1	Tomato	mitochondrion	11.4	21.98
Solyc04g080210.1.1	Tomato	mitochondrion	16.52	21.8
Solyc02g072030.1.1	Tomato	mitochondrion, nucleus, plastid	18.8	17.51
Solyc03g034100.2.1	Tomato	mitochondrion	17.95	16.11
Solyc02g085500.2.1	Tomato	mitochondrion	10.54	13.31
Solyc08g068170.1.1	Tomato	plastid	15.38	10.71

Protein Annotations

MapMan:15.5.37	InterPro:DNA_bnd_dom_ovate	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892
InterPro:IPR006458	UniProt:K4CAA5	InterPro:Ovate	InterPro:Ovate_C	PFAM:PF04844	PFAM:PF13724
PFscan:PS51754	PANTHER:PTHR33057	PANTHER:PTHR33057:SF38	EnsemblPlantsGene:Solyc06g082460.1	EnsemblPlants:Solyc06g082460.1.1	TIGRFAMs:TIGR01568
UniParc:UPI00027657BA	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:48258662..48259717

Molecular Weight (calculated)

40068.6 Da

IEP (calculated)

9.985

GRAVY (calculated)

-0.884

Length

351 amino acids

Sequence
(BLAST)

001: MGNHKFKFSD MMPNTWFYKL KDMSKTKNHK SPFSSSSTNK SQYSQPRSSF SYTRRSIRVD KIYNSHSYNF LDQPRRSSSS SSKKKSKRKT IYKPSPKHIP
101: SSVTNYVSVS NKLNTSSSVY STEEDKFPEL DFLNSPSSEF DSVDSQTFNE LPSTWPNSCN CHFTSSATDI IIDVNDKALS NEFHNLTTEY AEFSDIDQLP
201: PIFTKASNSI KNIKQDENVK AQREKEPKNR VGSPVSRKHY SSSSGVKLRT NSTKVANKRN SVSSSKRRSK TKKESCSASR GTSFAIVKAS IDPEKDFRES
301: MVEMVVENNI RASKELENLL ACYLSLNSNE YHDLIIKAFE QIWFDLSDLH L

Best Arabidopsis Sequence Match ( AT5G58360.1 )
(BLAST)

001: MKQKMGTHKF RFSDMMPHSW LYKLKGMSRS SRKHHLSSPK HLSSADASSS RKLRDPLRRL SSTAHHPQAS NSPPKSSSFK RKIKRKTVYK PSSRLKLSTS
101: SSLNHRSKSS SSANAISDSA VGSFLDRVSS PSDQNFVHDP EPHSSIDIKD ELSVRKLDDV PEDPSVSPNL SPETAKEPPF EMMTQQKLKK PKAHSSGIKI
201: PTKIVRKKKK ERTSQVSKKK GVVKSFAIVL SSVDPEKDFR ESMVEMIMEN KMREQKDLED LLACYLSLNS SEYHDVIIKA FENTWLHLTQ GLSISL

Arabidopsis Description

OFP3Transcription repressor OFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.