CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68812
CDX72343
CDX75215
CDX93852
CDY13472
CDY45968
CDY64892
CDY66559

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58360.1	CDX93852	AT1G62990.1	15781858
AT5G58360.1	CDY45968	AT1G62990.1	15781858
AT5G58360.1	CDY64892	AT1G62990.1	15781858
AT5G58360.1	CDY66559	AT1G62990.1	15781858
AT5G58360.1	CDX68812	AT4G32040.1	15781858
AT5G58360.1	CDX72343	AT4G32040.1	15781858
AT5G58360.1	CDX75215	AT4G32040.1	15781858
AT5G58360.1	CDY13472	AT4G32040.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32990	Canola	nucleus	92.76	94.06
CDY32706	Canola	cytosol	15.52	90.0
CDY02814	Canola	cytosol	14.83	86.0
AT5G58360.1	Thale cress	nucleus	68.28	66.89
CDX84837	Canola	nucleus	26.9	32.5
KRH72818	Soybean	nucleus	41.03	31.07
KRH17171	Soybean	nucleus, plastid	39.66	30.75
KRG98156	Soybean	nucleus	40.69	30.65
KRH30114	Soybean	nucleus	38.62	30.6
PGSC0003DMT400078126	Potato	nucleus	35.86	29.63
CDY10735	Canola	nucleus	31.38	29.45
Solyc06g082460.1.1	Tomato	nucleus	35.52	29.34
CDY62219	Canola	nucleus	31.03	29.13
CDY02063	Canola	nucleus	30.69	28.62
CDY04827	Canola	nucleus	25.17	28.4
CDX97830	Canola	nucleus	30.0	27.44
GSMUA_Achr3P09850_001	Banana	mitochondrion	29.31	26.81
CDY67505	Canola	nucleus, plastid	27.59	26.58
CDY29674	Canola	nucleus	29.66	26.54
CDY06241	Canola	mitochondrion	27.24	26.25
CDY09945	Canola	nucleus, plastid	26.9	25.91
CDY44933	Canola	mitochondrion	16.21	22.82
CDY42284	Canola	mitochondrion	15.86	22.22
CDX92512	Canola	mitochondrion	15.86	21.5
CDY58970	Canola	mitochondrion	15.86	21.5
CDX75076	Canola	nucleus	13.1	20.43
CDY43753	Canola	nucleus	13.1	20.43
CDY32705	Canola	mitochondrion	13.45	19.31
CDY09258	Canola	mitochondrion	20.34	18.44
CDX78899	Canola	mitochondrion	20.0	17.79
CDX99420	Canola	mitochondrion	20.0	17.74
CDY02815	Canola	plastid	11.72	17.17
CDY29238	Canola	nucleus, plastid	17.24	16.5
CDY36485	Canola	nucleus	17.59	16.35
CDY01560	Canola	nucleus	20.0	16.29
CDY59540	Canola	plastid	16.21	16.26
CDY43893	Canola	nucleus	16.9	15.56
CDY72229	Canola	nucleus	16.55	15.29
CDY62560	Canola	nucleus	16.9	10.38

Protein Annotations

MapMan:15.5.37	GO:A0A078HZ27	UniProt:A0A078HZ27	EnsemblPlants:CDY43860	ProteinID:CDY43860	ProteinID:CDY43860.1
InterPro:DNA_bnd_dom_ovate	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892	EnsemblPlantsGene:GSBRNA2T00077407001
InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C	PFAM:PF04844	PFAM:PF13724	PFscan:PS51754
PANTHER:PTHR33057	PANTHER:PTHR33057:SF38	TIGRFAMs:TIGR01568	UniParc:UPI0004EEBFA9	SEG:seg	:

Description

BnaC09g33830DBnaC09g33830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZ27]

Coordinates

chrLK032571:+:22086..23126

Molecular Weight (calculated)

32753.2 Da

IEP (calculated)

10.685

GRAVY (calculated)

-0.896

Length

290 amino acids

Sequence
(BLAST)

001: MKEMNQKMGT HKFRFSDMMP PSWLYKLKGM SRSSRKHLPS SPKRLSTDAS SSRNTLRLSS SPYHPQGSSS PPPKSPFKRK LKRKTVYKPS SRLKLSSSSS
101: SFNPHVPLTT SLSDSTVGSS SDPLSPSPSD QDYLESHSVD VKNNHSVKKL VSEDPSVTYN SSPDLSETIK KPPLEIKRQQ KLKKPKAGST GIRIRANSPR
201: IARKKTKGRT SPQPMMKKET AESFAIVLTS VDPEKDFRES MVEMIVENKM KEQKDLEDLL ACYLSLNSSE YHDTIIKAFE KTWFHLTRSM

Best Arabidopsis Sequence Match ( AT5G58360.1 )
(BLAST)

001: MKQKMGTHKF RFSDMMPHSW LYKLKGMSRS SRKHHLSSPK HLSSADASSS RKLRDPLRRL SSTAHHPQAS NSPPKSSSFK RKIKRKTVYK PSSRLKLSTS
101: SSLNHRSKSS SSANAISDSA VGSFLDRVSS PSDQNFVHDP EPHSSIDIKD ELSVRKLDDV PEDPSVSPNL SPETAKEPPF EMMTQQKLKK PKAHSSGIKI
201: PTKIVRKKKK ERTSQVSKKK GVVKSFAIVL SSVDPEKDFR ESMVEMIMEN KMREQKDLED LLACYLSLNS SEYHDVIIKA FENTWLHLTQ GLSISL

Arabidopsis Description

OFP3Transcription repressor OFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.